Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22430 250 / 1e-81 HD ATHB6 homeobox protein 6 (.1) AT4G40060 238 / 4e-77 HD ATHB16 ,ATHB-16 homeobox protein 16 (.1) AT5G65310 230 / 8e-74 HD ATHB-5, ATHB5 homeobox protein 5 (.1.2) AT3G01470 141 / 8e-40 HD HD-ZIP-1, HAT5, ATHB1, ATHB-1 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) AT1G69780 137 / 4e-38 HD ATHB13 Homeobox-leucine zipper protein family (.1) AT5G15150 133 / 3e-36 HD ATHB3, HAT7, ATHB-3 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) AT3G01220 131 / 5e-36 HD ATHB20 homeobox protein 20 (.1) AT2G46680 120 / 3e-32 HD ATHB7, ATHB-7 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) AT1G26960 120 / 7e-32 HD ATHB23 homeobox protein 23 (.1) AT3G61890 113 / 9e-30 HD ATHB12, ATHB-12 ARABIDOPSIS THALIANA HOMEOBOX 12, homeobox 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G071900 [exp] 535 / 0 AT2G22430 248 / 6e-81 homeobox protein 6 (.1) Potri.002G100600 [exp] 214 / 3e-68 AT4G40060 191 / 1e-59 homeobox protein 16 (.1) Potri.005G161500 [exp] 204 / 2e-64 AT4G40060 187 / 4e-58 homeobox protein 16 (.1) Potri.015G065400 [exp] 142 / 8e-40 AT3G01470 136 / 4e-38 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.012G070900 [exp] 140 / 6e-39 AT3G01470 145 / 1e-41 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.008G148200 [exp] 136 / 9e-38 AT1G69780 333 / 6e-115 Homeobox-leucine zipper protein family (.1) Potri.017G081700 [exp] 136 / 1e-37 AT5G15150 248 / 5e-81 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) Potri.010G093400 [exp] 135 / 4e-37 AT1G69780 308 / 5e-105 Homeobox-leucine zipper protein family (.1) Potri.008G194400 [exp] 124 / 3e-33 AT5G15150 122 / 1e-32 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023159 [exp] 191 / 1e-58 AT4G40060 220 / 1e-70 homeobox protein 16 (.1) Lus10008795 [exp] 140 / 3e-39 AT3G01470 261 / 3e-87 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10036674 [exp] 139 / 1e-38 AT3G01470 153 / 8e-45 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10022225 [exp] 138 / 2e-38 AT3G01470 270 / 2e-90 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10037200 [exp] 137 / 7e-38 AT1G69780 319 / 2e-109 Homeobox-leucine zipper protein family (.1) Lus10036730 [exp] 137 / 7e-38 AT1G69780 325 / 9e-112 Homeobox-leucine zipper protein family (.1) Lus10033102 [exp] 136 / 1e-37 AT3G01470 151 / 4e-44 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10012845 [exp] 134 / 2e-37 AT1G69780 280 / 1e-94 Homeobox-leucine zipper protein family (.1) Lus10030493 [exp] 134 / 3e-37 AT1G69780 288 / 1e-97 Homeobox-leucine zipper protein family (.1) Lus10042180 [exp] 130 / 3e-35 AT3G01470 159 / 6e-47 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00046 [poplar] [flax] Homeodomain Homeodomain CL0123 [poplar] [flax] PF02183 [poplar] [flax] HALZ Homeobox associated leucine zipper
Representative CDS sequence Show only first row Show all	>Potri.007G097100.1 pacid=42765675 polypeptide=Potri.007G097100.1.p locus=Potri.007G097100 ID=Potri.007G097100.1.v4.1 annot-version=v4.1 ATGAAGAGATCACTAGGCAGCTCTGATTCCCTTGGTGCTTTGATGTCCATCTGCCCATCTGCAGAGGAACACAGTCCAAGGAACCACACCCATGTTTATA GTAGGGAATTCCAGTCCATGTTGGATGGCTTAGATGAAGAGGGTTGTGTGGAAGAAGCCGGAGGCCATGTTACCGAGAAGAAAAGGCGCTTAAGTGGAGA TCAAGTTAAGGCCTTGGAGAAAAACTTTGAGGTCGAAAACAAACTTGAACCTGAGAGAAAAGTTAAGTTAGCCCAAGAACTTGGCTTGCAACCAAGACAA GTCGCTGTTTGGTTCCAAAACCGCCGTGCCCGGTGGAAAACCAAGCAATTGGAGAGAGATTATGGCGTTCTTAAAGCCAATTATGATTCTCTTAAGCACA ATTTTGATGCCCTCCAACATGACAATGAAGCTCTACTCAAAGAGATAAGGGAACTGAAAGCAAAGCTGAACGAAGAGAACGCGGAGAGCAATGTTTCTGT GAAAGAAGAGATAATTTTGGCCGAGTCAGAAGACAAGATGCCTGAAGAAGATACACCAGCACTCCTTGATTCTGTTGCTGCATCGGAAACAAAAGAGCTG AATTATGAAACCTTCAACAATCACAGCAGTATTAATATTGGACTAGGAGCCTCTCTTTTCCCAGACTTCAAAGATGGGTCATCAGACAGTGACTCAAGTG CAATCTTGAATGAAGATAACAGCCCTAACCCAGCCATTTCCTCATCTGGGATTCTCCAAAGCCAGCTAATGATGTCCCCGCCACCATCTTCATCACTCAG ATTCAACTGCTCCGCCTCATCTTCTTCACCATCATCAATGAATTGCTTTCAGTTCTCCAAATCATATCAAACCCAGTTTGTCAAGCTGGAAGAGCACAAT TTCTTTAGCAGTGAGGAGGCTTGCAATTTCTTCTCTGATGAGCAACCTCCGAGTCTTCCTTGGTACAGTTCTGATCAATGGAACTAG
AA sequence Show only first row Show all	>Potri.007G097100.1 pacid=42765675 polypeptide=Potri.007G097100.1.p locus=Potri.007G097100 ID=Potri.007G097100.1.v4.1 annot-version=v4.1 MKRSLGSSDSLGALMSICPSAEEHSPRNHTHVYSREFQSMLDGLDEEGCVEEAGGHVTEKKRRLSGDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQ VAVWFQNRRARWKTKQLERDYGVLKANYDSLKHNFDALQHDNEALLKEIRELKAKLNEENAESNVSVKEEIILAESEDKMPEEDTPALLDSVAASETKEL NYETFNNHSSINIGLGASLFPDFKDGSSDSDSSAILNEDNSPNPAISSSGILQSQLMMSPPPSSSLRFNCSASSSSPSSMNCFQFSKSYQTQFVKLEEHN FFSSEEACNFFSDEQPPSLPWYSSDQWN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G22430	HD	ATHB6	homeobox protein 6 (.1)		Potri.007G097100 [exp]	0	1
AT2G22430	HD	ATHB6	homeobox protein 6 (.1)		Potri.005G071900 [exp]	1.00	0.9289
AT1G06230		GTE4	global transcription factor gr...		Potri.001G376400 [exp]	2.44	0.8942	GTE910
AT2G24530			unknown protein		Potri.003G187400 [exp]	3.46	0.8620
AT2G24530			unknown protein		Potri.006G274800 [exp]	4.47	0.8264
AT5G04940		SUVH1	SU(VAR)3-9 homolog 1 (.1), SU(...		Potri.019G087900 [exp]	5.65	0.8697	SDG907,SUVH3.1
AT5G63540		BLAP75, ATRMI1	RECQ MEDIATED INSTABILITY 1, D...		Potri.015G100200 [exp]	6.48	0.8365
AT1G73100		SDG19, SUVH3	SET DOMAIN PROTEIN 19, SU(VAR)...		Potri.001G036800 [exp]	7.14	0.8726	SUVH3.4,SDG950
AT1G14740			Protein of unknown function (D...		Potri.010G102600 [exp]	8.48	0.8219
AT3G22170	FAR1_related	FHY3	far-red elongated hypocotyls 3...		Potri.016G018300 [exp]	9.48	0.8523	Pt-FHY3.1
AT1G11700			Protein of unknown function, D...		Potri.011G003300 [exp]	10.39	0.8268

Compare expression of checked genes

Potri.007G097100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.