Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63770 931 / 0 ATDGK2 diacylglycerol kinase 2 (.1.2) AT5G07920 643 / 0 ATDGK1, DGK1 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1) AT4G28130 161 / 1e-42 DGK6, ATDGK6 diacylglycerol kinase 6 (.1) AT2G20900 148 / 6e-38 DGK5, ATDGK5 diacylglycerol kinase 5 (.1.2.3.4) AT5G57690 140 / 2e-35 ATDGK4 diacylglycerol kinase 4 (.1) AT2G18730 137 / 2e-34 ATDGK3 diacylglycerol kinase 3 (.1) AT4G30340 135 / 1e-33 ATDGK7 diacylglycerol kinase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G070900 [exp] 1252 / 0 AT5G63770 897 / 0.0 diacylglycerol kinase 2 (.1.2) Potri.012G066300 [exp] 665 / 0 AT5G07920 1154 / 0.0 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1) Potri.013G148500 [exp] 156 / 1e-40 AT2G20900 765 / 0.0 diacylglycerol kinase 5 (.1.2.3.4) Potri.001G408500 [exp] 154 / 1e-39 AT2G20900 695 / 0.0 diacylglycerol kinase 5 (.1.2.3.4) Potri.006G174700 [exp] 136 / 4e-34 AT4G30340 670 / 0.0 diacylglycerol kinase 7 (.1) Potri.018G096700 [exp] 136 / 6e-34 AT2G18730 702 / 0.0 diacylglycerol kinase 3 (.1) Potri.002G162900 [exp] 42 / 0.001 AT2G46090 492 / 3e-175 Diacylglycerol kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012719 [exp] 968 / 0 AT5G63770 957 / 0.0 diacylglycerol kinase 2 (.1.2) Lus10010896 [exp] 966 / 0 AT5G63770 955 / 0.0 diacylglycerol kinase 2 (.1.2) Lus10021625 [exp] 638 / 0 AT5G07920 1101 / 0.0 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1) Lus10003460 [exp] 568 / 0 AT5G07920 1050 / 0.0 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1) Lus10015742 [exp] 556 / 0 AT5G07920 1053 / 0.0 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1) Lus10034701 [exp] 389 / 7e-128 AT5G07920 746 / 0.0 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1) Lus10034702 [exp] 268 / 5e-85 AT5G07920 400 / 8e-137 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1) Lus10031612 [exp] 149 / 9e-38 AT2G20900 719 / 0.0 diacylglycerol kinase 5 (.1.2.3.4) Lus10019987 [exp] 139 / 9e-35 AT4G30340 713 / 0.0 diacylglycerol kinase 7 (.1) Lus10015514 [exp] 139 / 1e-34 AT4G30340 707 / 0.0 diacylglycerol kinase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0006 [poplar] [flax] C1 PF00130 [poplar] [flax] C1_1 Phorbol esters/diacylglycerol binding domain (C1 domain) CL0006 [poplar] [flax] PF00609 [poplar] [flax] DAGK_acc Diacylglycerol kinase accessory domain CL0240 [poplar] [flax] PFK PF00781 [poplar] [flax] DAGK_cat Diacylglycerol kinase catalytic domain
Representative CDS sequence Show only first row Show all	>Potri.007G097900.1 pacid=42765075 polypeptide=Potri.007G097900.1.p locus=Potri.007G097900 ID=Potri.007G097900.1.v4.1 annot-version=v4.1 ATGATTGGATTGGGAATTTCGCTTGTACGTGTGCTTACAAGCTCTAATGATGATTATAGTGGATCTTTTATTGCCTGGTTAATTACTGCTGCTTTAGGTT TTGTAACTATTGTTTATGGATTAATTAAATGGCATAAAAGAGCATCTCAGAAATGGGTTAAAGCTGCGGCTAAAGCGAAGAAGCAAGTTTGGAAAAAGTT AAATGTTCCACGGTCTAGTCATTTATGGATTGAAGATTTAGCTTATGGTCAAAAACAGCCGTCTACATGTTGTGTTTGTTTGACTTCATTGGTTTTACCT TATAATGGCGATAATGCCTTGTTGTGTAGTGATTTTGTGCACTGTTGTGTTGTTTGCGGTGCGGCAGCTCATTTTCATTGTTCAGAGTTTGCAGTAAAGG ATTGTAAGTGTATTGCGCAAGCAGGGTCTTGTCATGTGCGGCATCATTGGTCGGAGAGATGGTTTAATATGGATGAGATTCCTGAGATGAATGCCTTTTG TTCTTATTGTGATGAACCGTGTGGTGTTCCTTTTATTGATGCTTCTCCGACATGGCATTGTTTGTGGTGTCAGAGGCTCATTCATGTGAAATGTCATGCT AAATTGTCTAAGGAATCTGGTGATGTTTGTGATTTGGGTCCACTTAGGAGGTCTATTCTTTCACCGCTCTGTGTGAAGGAAGTTGATGGAGGAAACAGCT TAAGTTTGATCAAGGGGGAAATTATAGCCTCTAATGTTCGTAGGCAGATGAGAAGCAAGCAGCAAAGCAGAGGCAAACAAGGAAACATTCGCTCTGTTAA TGGTAAGTTGCAGGATGCAACAACTGCCAATAGAAGCCTTGATTTTGTGTTGAATGGTCTTGCTGGATTGAGGAGATGCAGGAGCGAGACTAATATCCAC TGCTTAAAGAAGAATGGCAGGATTAAGGGCACACTTAATGGGCTAATGCATAATAAAGGTGGAACTGCTATCTGTCAACAAGTTAAGAAATATGCTTTGG TTGATTTGGCTCAAGATGCAAGGCCCCTTTTGGTTTTTATTAATTCCAAGAGTGGAGGTCAACTTGGGCCTTATCTTCGAAGGACACTAAACATGCTGTT GAATCCTGTTCAGGTATTTGAACTAAGTGGTTCCCAGGGGCCTGATATTGGTTTGGAGTTATTTAGCAAGGTGCGGTATTTTAGAGTTTTGGTCTGTGGT GGAGATGGAACTGTTTCATGGGTCCTTGATGCTATTGAGAGGCACAACTTTGAGTCTCCACCACCCGTTGCTATTCTTCCCCTTGGTACAGGAAATGATT TGTCAAGGGTTTTGCAATGGGGAAGAGGCTTCTCAATGTTTGATGGACTAGGTGGCTTAAGCACACTTTTGCAAGATATTGACCATGCTGCAGTTACAAT GCTAGATCGCTGGAAAGTAAATATCAGAGAAGAGAATTCAGAAGGGTATATGGAAAAAGAGCAATCCAAATTCATGATGAATTATTTAGGTATTGGATGT GATGCTAAGCTTGCATATGAATTCCATGTAACACGTCAGGAAAATCCTGAGAAGTTTAGTAGCCAGTTTGTCAATAAACTGCGATATGCCAGAGAAGGTG CCAGGGATATGATGGACAGAGCTTGTGCTGACTTACCATGGCAGGTTTGGCTTGAAGTTGATGGGAAAGACATACAGATTCCAAAGGATTGTGAGGGTTT AATTGTGCTGAACATTGGCAGCTATATGGGGGGTGTAGATCTTTGGCAAAATGACTATGAGCATGATGATGATTTCAGTCTTCAATCCATGCAAGATAAA ATGCTTGAAGTTGTAAGTGTCCGTGGAGCATGGCACCTCGGAAAACTTCAGGTTGGACTTTCACAAGCTATGAGGCTAGCACAAGGGAAGGTAATCAGGA TACATGCTTCAAGCTCTTTCCCAGTTCAGATAGATGGGGAACCATTCATCCATCAACCTGGTTGCTTAGAAATAAAACATGATGGACAGGTGTTCATGTT GAGGAGAGCCTCGGAGGAGCCCAGAGGCCATGCAGCTGCAATAATGACAGAGGTCTTGGCAGATGCTGAGTGCAAAGGAATTATCAATGCATCTCAGAAG AAATTACTTCTCCAGCAATTGGCCCTCAATCTCTCCTCCTAG
AA sequence Show only first row Show all	>Potri.007G097900.1 pacid=42765075 polypeptide=Potri.007G097900.1.p locus=Potri.007G097900 ID=Potri.007G097900.1.v4.1 annot-version=v4.1 MIGLGISLVRVLTSSNDDYSGSFIAWLITAALGFVTIVYGLIKWHKRASQKWVKAAAKAKKQVWKKLNVPRSSHLWIEDLAYGQKQPSTCCVCLTSLVLP YNGDNALLCSDFVHCCVVCGAAAHFHCSEFAVKDCKCIAQAGSCHVRHHWSERWFNMDEIPEMNAFCSYCDEPCGVPFIDASPTWHCLWCQRLIHVKCHA KLSKESGDVCDLGPLRRSILSPLCVKEVDGGNSLSLIKGEIIASNVRRQMRSKQQSRGKQGNIRSVNGKLQDATTANRSLDFVLNGLAGLRRCRSETNIH CLKKNGRIKGTLNGLMHNKGGTAICQQVKKYALVDLAQDARPLLVFINSKSGGQLGPYLRRTLNMLLNPVQVFELSGSQGPDIGLELFSKVRYFRVLVCG GDGTVSWVLDAIERHNFESPPPVAILPLGTGNDLSRVLQWGRGFSMFDGLGGLSTLLQDIDHAAVTMLDRWKVNIREENSEGYMEKEQSKFMMNYLGIGC DAKLAYEFHVTRQENPEKFSSQFVNKLRYAREGARDMMDRACADLPWQVWLEVDGKDIQIPKDCEGLIVLNIGSYMGGVDLWQNDYEHDDDFSLQSMQDK MLEVVSVRGAWHLGKLQVGLSQAMRLAQGKVIRIHASSSFPVQIDGEPFIHQPGCLEIKHDGQVFMLRRASEEPRGHAAAIMTEVLADAECKGIINASQK KLLLQQLALNLSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63770		ATDGK2	diacylglycerol kinase 2 (.1.2)		Potri.007G097900 [exp]	0	1
AT5G63770		ATDGK2	diacylglycerol kinase 2 (.1.2)		Potri.005G070900 [exp]	1.00	0.9132
AT1G28760			Uncharacterized conserved prot...		Potri.013G064800 [exp]	2.82	0.8280
AT1G78280			transferases, transferring gly...		Potri.002G099400 [exp]	3.00	0.8320
AT5G13160		PBS1	avrPphB susceptible 1, Protein...		Potri.003G166900 [exp]	8.06	0.8161	Pt-PBS1.1
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014370 [exp]	8.48	0.7855
AT3G11760			unknown protein		Potri.018G027200 [exp]	8.77	0.7907
AT4G22120			ERD (early-responsive to dehyd...		Potri.004G005900 [exp]	10.67	0.7405
AT4G28400			Protein phosphatase 2C family ...		Potri.017G013300 [exp]	11.40	0.7777
AT2G35980		NHL10, YLS9, AT...	YELLOW-LEAF-SPECIFIC GENE 9, A...		Potri.006G204300 [exp]	11.83	0.8350	B13.1
					Potri.002G172050 [exp]	13.74	0.7249

Compare expression of checked genes

Potri.007G097900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.