Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80900 252 / 2e-79 MRS2-10, ATMGT1 magnesium transporter 1 (.1) AT5G64560 219 / 2e-67 MRS2-2, ATMGT9 magnesium transporter 9 (.1.2) AT1G16010 220 / 4e-67 AtMRS2-1, AtMGT2, MRS2-1, MGT2 magnesium transporter 2 (.1.2.3) AT5G09690 218 / 6e-67 MRS2-7, ATMGT7 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) AT3G19640 214 / 4e-64 MRS2-3, MGT4 magnesium transporter 4 (.1) AT3G58970 200 / 1e-59 MRS2-4, MGT6 magnesium transporter 6 (.1) AT4G28580 157 / 2e-43 MRS2-6, ATMGT5 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORT 5, magnesium transport 5 (.1) AT2G03620 141 / 1e-37 AtMRS2-5, AtMGT3, MRS2-5, MGT3 magnesium transporter 3 (.1.2) AT5G09720 115 / 3e-29 Magnesium transporter CorA-like family protein (.1) AT5G09710 84 / 1e-17 Magnesium transporter CorA-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G098200 [exp] 545 / 0 AT1G80900 301 / 1e-98 magnesium transporter 1 (.1) Potri.001G043200 [exp] 245 / 9e-77 AT1G16010 637 / 0.0 magnesium transporter 2 (.1.2.3) Potri.003G183600 [exp] 239 / 4e-74 AT1G16010 699 / 0.0 magnesium transporter 2 (.1.2.3) Potri.010G077900 [exp] 220 / 1e-67 AT5G64560 531 / 0.0 magnesium transporter 9 (.1.2) Potri.008G161400 [exp] 217 / 2e-66 AT5G64560 552 / 0.0 magnesium transporter 9 (.1.2) Potri.009G086300 [exp] 199 / 9e-59 AT3G19640 431 / 4e-148 magnesium transporter 4 (.1) Potri.006G081700 [exp] 186 / 5e-54 AT3G58970 538 / 0.0 magnesium transporter 6 (.1) Potri.008G096200 [exp] 146 / 3e-39 AT2G03620 438 / 1e-152 magnesium transporter 3 (.1.2) Potri.010G158100 [exp] 137 / 4e-36 AT2G03620 417 / 2e-144 magnesium transporter 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026063 [exp] 246 / 7e-77 AT1G16010 744 / 0.0 magnesium transporter 2 (.1.2.3) Lus10014353 [exp] 245 / 1e-76 AT1G16010 745 / 0.0 magnesium transporter 2 (.1.2.3) Lus10026745 [exp] 224 / 1e-69 AT3G19640 401 / 2e-138 magnesium transporter 4 (.1) Lus10025531 [exp] 223 / 2e-68 AT3G19640 407 / 8e-140 magnesium transporter 4 (.1) Lus10021887 [exp] 219 / 6e-67 AT5G64560 574 / 0.0 magnesium transporter 9 (.1.2) Lus10008803 [exp] 214 / 3e-65 AT5G64560 570 / 0.0 magnesium transporter 9 (.1.2) Lus10022218 [exp] 199 / 1e-57 AT5G09690 513 / 1e-179 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) Lus10015459 [exp] 187 / 3e-54 AT3G58970 560 / 0.0 magnesium transporter 6 (.1) Lus10024860 [exp] 166 / 6e-47 AT5G09690 478 / 3e-169 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) Lus10037081 [exp] 150 / 1e-41 AT2G03620 479 / 6e-170 magnesium transporter 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01544 [poplar] [flax] CorA CorA-like Mg2+ transporter protein
Representative CDS sequence Show only first row Show all	>Potri.007G098000.1 pacid=42765191 polypeptide=Potri.007G098000.1.p locus=Potri.007G098000 ID=Potri.007G098000.1.v4.1 annot-version=v4.1 ATGGCTACAAAATTAAAGAAAGGAATGCCAGTGGTAAAGGCATGGCTAGTGATATCAGAATCAGGTCAGTCTTCTATCGAGGAAATAGGGAAACACTCGA TGATGAAGAGGACTGGATTGCCTGCACGAGATCTGAGAGCATTGGATCCGGTTCTATCGTATCCGTCGTCGATTTTGGGACGAGAGAGGGCTATTGTTGT GAGTTTGGAGCACATCAGGGCTATTATTACCTCGAAGGAAGTGCTTTTGATTAATTATAATAATCCTCTGGTGGTTCAGTTTGTTCAGGATCTTCAGCAT CGTATTGTTTTTGGTAACAATAATGTCACTTCTCCACACCAGGCAATGGATCATACTGGTAAAGAAATGGAGGACGCAGCTGAGGTTACATGGGGTTCAC CCTCATTAAATACACTTCATTCTTCAGCAAAAAGCTTAAGCAAGAGGAGAGCTCCAACTTGTAATTTTGTAAATATGAAAAGTCAGGAAATAGAGGGTGA GGGTGCAAATTCAACAATAAATGTTTCAGTAGCTGCAGGTTCCAAGGCGCTTCCTTTTGAGTTCAAAGCACTTGAAGCTTGCCTTGAATCTGCTTGTAGG TGCCTTGAAACTGAGACTCGGACATTGGAGGAAGAGGCATATCCTGCTTTGGATGAGCTGACTTCTAAAATTAGCACACTCAATCTTGAACGTGTTAGAC AGATAAAAAGTCGTCTTGTTGCTTTATCCGGTCGCGTTCAAAAGGTGAGGGATGAACTTGAAAATCTGCTGGATGATGACAATGATATGGCAGAAATGTA TTTGACAGAAAAGGTGGTTGCTCGTGCAGTGGATCAAATTTCTACCATAGAGGAAGTATATGACGGTGAACGTGAAGTAGATGATGAGAGTGTTGATGAC TGCTCTGAAACCAGCACCAGCGTTAAGCCAGACATCGAAGAGTTAGAGATGCTTTTGGAAGCATATTTTGCACAAATAGATGGCATCTTACAGAAACTAT CCGGTATGAGTGAATATGTGGATGACACAGAGGACTTCATCAACATAATGTTAGATGACAAACAAAATCAGCTGCTGCAGATGGGAGTGATCCTCAGCGC TGCAAACATGATACTCAATGCAGGCATTGCGGTTGTAGGATTCTTTGGAATGAACATTCATGTTACACTGTTTGATGGGAAACCAATACAATTTTGGGAG ACTGTGATCGGTACATGTGGAGGTTGCATTGCTTTATTTCTAGTTCTTTTAGGGTGGGGTAAGAGAGAAAAAATATTGGCTCTGTAA
AA sequence Show only first row Show all	>Potri.007G098000.1 pacid=42765191 polypeptide=Potri.007G098000.1.p locus=Potri.007G098000 ID=Potri.007G098000.1.v4.1 annot-version=v4.1 MATKLKKGMPVVKAWLVISESGQSSIEEIGKHSMMKRTGLPARDLRALDPVLSYPSSILGRERAIVVSLEHIRAIITSKEVLLINYNNPLVVQFVQDLQH RIVFGNNNVTSPHQAMDHTGKEMEDAAEVTWGSPSLNTLHSSAKSLSKRRAPTCNFVNMKSQEIEGEGANSTINVSVAAGSKALPFEFKALEACLESACR CLETETRTLEEEAYPALDELTSKISTLNLERVRQIKSRLVALSGRVQKVRDELENLLDDDNDMAEMYLTEKVVARAVDQISTIEEVYDGEREVDDESVDD CSETSTSVKPDIEELEMLLEAYFAQIDGILQKLSGMSEYVDDTEDFINIMLDDKQNQLLQMGVILSAANMILNAGIAVVGFFGMNIHVTLFDGKPIQFWE TVIGTCGGCIALFLVLLGWGKREKILAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80900		MRS2-10, ATMGT1	magnesium transporter 1 (.1)		Potri.007G098000 [exp]	0	1
AT5G07820			Plant calmodulin-binding prote...		Potri.012G067100 [exp]	1.41	0.9431
					Potri.005G011350 [exp]	2.44	0.9489
AT4G05030			Copper transport protein famil...		Potri.006G002000 [exp]	2.82	0.9330
AT2G45770		FRD4, CPFTSY	FERRIC CHELATE REDUCTASE DEFEC...		Potri.002G155400 [exp]	4.69	0.9175
					Potri.006G267450 [exp]	4.89	0.9210
					Potri.007G086250 [exp]	5.09	0.9101
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Potri.016G062200 [exp]	6.70	0.9183	Pt-MS2.2
					Potri.001G073350 [exp]	8.83	0.9410
AT1G58400			Disease resistance protein (CC...		Potri.012G083700 [exp]	11.83	0.9181
AT2G18410			unknown protein		Potri.017G115566 [exp]	12.00	0.8442

Compare expression of checked genes

Potri.007G098000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.