Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80900 300 / 3e-98 MRS2-10, ATMGT1 magnesium transporter 1 (.1) AT1G16010 286 / 7e-93 AtMRS2-1, AtMGT2, MRS2-1, MGT2 magnesium transporter 2 (.1.2.3) AT5G09690 265 / 3e-85 MRS2-7, ATMGT7 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) AT5G64560 260 / 2e-83 MRS2-2, ATMGT9 magnesium transporter 9 (.1.2) AT3G19640 256 / 2e-80 MRS2-3, MGT4 magnesium transporter 4 (.1) AT3G58970 239 / 8e-75 MRS2-4, MGT6 magnesium transporter 6 (.1) AT2G03620 232 / 5e-72 AtMRS2-5, AtMGT3, MRS2-5, MGT3 magnesium transporter 3 (.1.2) AT4G28580 179 / 5e-52 MRS2-6, ATMGT5 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORT 5, magnesium transport 5 (.1) AT5G09720 159 / 1e-45 Magnesium transporter CorA-like family protein (.1) AT5G09710 125 / 2e-32 Magnesium transporter CorA-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G098000 [exp] 578 / 0 AT1G80900 252 / 2e-79 magnesium transporter 1 (.1) Potri.001G043200 [exp] 289 / 6e-94 AT1G16010 637 / 0.0 magnesium transporter 2 (.1.2.3) Potri.003G183600 [exp] 283 / 1e-91 AT1G16010 699 / 0.0 magnesium transporter 2 (.1.2.3) Potri.008G161400 [exp] 254 / 4e-81 AT5G64560 552 / 0.0 magnesium transporter 9 (.1.2) Potri.010G077900 [exp] 249 / 4e-79 AT5G64560 531 / 0.0 magnesium transporter 9 (.1.2) Potri.009G086300 [exp] 250 / 1e-78 AT3G19640 431 / 4e-148 magnesium transporter 4 (.1) Potri.008G096200 [exp] 231 / 9e-72 AT2G03620 438 / 1e-152 magnesium transporter 3 (.1.2) Potri.010G158100 [exp] 226 / 6e-70 AT2G03620 417 / 2e-144 magnesium transporter 3 (.1.2) Potri.006G081700 [exp] 222 / 5e-68 AT3G58970 538 / 0.0 magnesium transporter 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026063 [exp] 288 / 1e-93 AT1G16010 744 / 0.0 magnesium transporter 2 (.1.2.3) Lus10014353 [exp] 288 / 2e-93 AT1G16010 745 / 0.0 magnesium transporter 2 (.1.2.3) Lus10025531 [exp] 269 / 1e-86 AT3G19640 407 / 8e-140 magnesium transporter 4 (.1) Lus10026745 [exp] 254 / 1e-81 AT3G19640 401 / 2e-138 magnesium transporter 4 (.1) Lus10024860 [exp] 248 / 1e-78 AT5G09690 478 / 3e-169 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) Lus10021887 [exp] 247 / 6e-78 AT5G64560 574 / 0.0 magnesium transporter 9 (.1.2) Lus10008803 [exp] 240 / 3e-75 AT5G64560 570 / 0.0 magnesium transporter 9 (.1.2) Lus10022218 [exp] 241 / 2e-73 AT5G09690 513 / 1e-179 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) Lus10037081 [exp] 229 / 2e-71 AT2G03620 479 / 6e-170 magnesium transporter 3 (.1.2) Lus10015459 [exp] 229 / 1e-70 AT3G58970 560 / 0.0 magnesium transporter 6 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.007G098200.1 pacid=42765876 polypeptide=Potri.007G098200.1.p locus=Potri.007G098200 ID=Potri.007G098200.1.v4.1 annot-version=v4.1 ATGGCTTCGAAATTAAAGAAAGGCATGATAGGGGTGAAGGCATGGCTGGTGATATCAGAATCGGGACAATCGTTTGTAGAGGAAGTAGGGAAGCATTCGA TAATGAAGAGGACTGGATTGCCTGCACGTGATTTGAGAGCATTGGACCCGGTGCTGTCATATCCGTCGTCGATTTTGGGAAGAGAAAGGGCTATTGTTGT GAACTTGGAGCATATTAGGGCTATTATTACAGCAACAGAAGTGCTTATGATTAATTCTAATAATCCTTTGATTGTTCAGTTTGTTGAGGATCTTCAACAT CGGATTGCTTTTGGTAATGCCAATGCTACGCCTCCACAGCAGGCAATGGATCATGATGGCACTGGCTTGGGGGATGCAGCTGACACGACATCTCCAACTT ATAATTCCGGAGATATGAAGAGTACGGAAATAGCGGGTGAGAGTGCAAATTCAATGATGAATGATCTAGTAGGTGCTGGTCCCAAGGTGCTTCCGTTTGA GTTCAAAGCACTTGAAGCTTGTCTTGAATCTGCTTGCAGGTGCCTTGAATCTGAGACTCAGACATTGGAAGAAGAGGCATATCCTGCTTTGGATGAACTG ACTTCTAACATCAGCACACTCAATCTTGAGCGTGTTAGACAGATAAAAAGTCGCCTAGTTGCAATTTCTGGACGCGTGCAGAAGGTGAGAGATGAACTTG AACATCTGCTGGACGATGACAATGATATGGCTGAAATGTATTTGACAGAAAAGATTTATGCTTATGCAGCAGATCAAACATGTTCAATAGAGGAAGTATA TGATGGTGAACAAGAAGTAGATGATGAAAGTGTTGATGATTCCAAATCTGGAGATGACTCTGAAATCTACACCAGCTCTAAGCCAAATGTCGAGGAGTTG GAGATGCTTTTAGAGGCCTATTTTGCACAGATAGACGGAACCTTACAGAAACTATCCCATATGCGCGACTACGTGGACGACACAGAGGACTTCATCAACA TAATGTTGGATGACAAGCAGAATCAGCTGCTACAGATGGGAGTGATGCTTGGTGCTGCAAACATGATACTCAATGCAGGCATTGTGGTCGTAGGACTGTT TGGAATGAACATTCATATAGAACTCTTTGATGGTAAACCAATACAATTCTTGGAGGCTGTGATTGGTGCATGTGGAGGATGTGTTGCTCTATTTATAGTT GCTTTAGGATGGGGTAAGAAGAAAAATATACTGGCTCTTTAG
AA sequence Show only first row Show all	>Potri.007G098200.1 pacid=42765876 polypeptide=Potri.007G098200.1.p locus=Potri.007G098200 ID=Potri.007G098200.1.v4.1 annot-version=v4.1 MASKLKKGMIGVKAWLVISESGQSFVEEVGKHSIMKRTGLPARDLRALDPVLSYPSSILGRERAIVVNLEHIRAIITATEVLMINSNNPLIVQFVEDLQH RIAFGNANATPPQQAMDHDGTGLGDAADTTSPTYNSGDMKSTEIAGESANSMMNDLVGAGPKVLPFEFKALEACLESACRCLESETQTLEEEAYPALDEL TSNISTLNLERVRQIKSRLVAISGRVQKVRDELEHLLDDDNDMAEMYLTEKIYAYAADQTCSIEEVYDGEQEVDDESVDDSKSGDDSEIYTSSKPNVEEL EMLLEAYFAQIDGTLQKLSHMRDYVDDTEDFINIMLDDKQNQLLQMGVMLGAANMILNAGIVVVGLFGMNIHIELFDGKPIQFLEAVIGACGGCVALFIV ALGWGKKKNILAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80900		MRS2-10, ATMGT1	magnesium transporter 1 (.1)		Potri.007G098200 [exp]	0	1
AT3G28450			Leucine-rich repeat protein ki...		Potri.001G349900 [exp]	3.16	0.9082
AT2G19460			Protein of unknown function (D...		Potri.006G147700 [exp]	3.87	0.9114
AT4G33565			RING/U-box superfamily protein...		Potri.017G049300 [exp]	5.47	0.8538
AT3G10190			Calcium-binding EF-hand family...		Potri.016G040900 [exp]	7.48	0.8638
AT3G29400		ATEXO70E1	exocyst subunit exo70 family p...		Potri.017G093700 [exp]	9.74	0.8775
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.011G121200 [exp]	11.31	0.8775
AT1G12970		PIRL3	plant intracellular ras group-...		Potri.010G046500 [exp]	13.52	0.8893
AT3G26020			Protein phosphatase 2A regulat...		Potri.008G179900 [exp]	13.74	0.8414
AT3G19553			Amino acid permease family pro...		Potri.001G296100 [exp]	16.70	0.8604
AT4G17900			PLATZ transcription factor fam...		Potri.003G092800 [exp]	18.16	0.8584

Compare expression of checked genes

Potri.007G098200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.