Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08740 710 / 0 NDC1 NAD(P)H dehydrogenase C1 (.1) AT2G29990 69 / 3e-12 NDA2 alternative NAD(P)H dehydrogenase 2 (.1) AT1G07180 57 / 2e-08 NDA1, ATNDI1 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) AT5G22140 52 / 6e-07 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) AT2G20800 45 / 0.0002 NDB4 NAD(P)H dehydrogenase B4 (.1) AT4G05020 44 / 0.0002 NDB2 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G036300 [exp] 77 / 1e-14 AT2G29990 678 / 0.0 alternative NAD(P)H dehydrogenase 2 (.1) Potri.011G044600 [exp] 74 / 9e-14 AT1G07180 681 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Potri.009G047100 [exp] 63 / 3e-10 AT2G29990 757 / 0.0 alternative NAD(P)H dehydrogenase 2 (.1) Potri.013G147200 [exp] 44 / 0.0002 AT4G28220 852 / 0.0 NAD(P)H dehydrogenase B1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014555 [exp] 674 / 0 AT5G08740 647 / 0.0 NAD(P)H dehydrogenase C1 (.1) Lus10032131 [exp] 647 / 0 AT5G08740 610 / 0.0 NAD(P)H dehydrogenase C1 (.1) Lus10038322 [exp] 79 / 3e-15 AT1G07180 746 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10040657 [exp] 79 / 3e-15 AT1G07180 750 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10036185 [exp] 79 / 3e-15 AT1G07180 742 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10020091 [exp] 72 / 6e-13 AT1G07180 674 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10006731 [exp] 71 / 1e-12 AT1G07180 679 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10039769 [exp] 67 / 1e-11 AT4G28220 770 / 0.0 NAD(P)H dehydrogenase B1 (.1) Lus10018541 [exp] 67 / 1e-11 AT4G28220 819 / 0.0 NAD(P)H dehydrogenase B1 (.1) Lus10018248 [exp] 48 / 9e-06 AT1G07180 328 / 3e-110 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF07992 [poplar] [flax] Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Potri.007G098700.3 pacid=42765335 polypeptide=Potri.007G098700.3.p locus=Potri.007G098700 ID=Potri.007G098700.3.v4.1 annot-version=v4.1 ATGGCACTAGCTGCTTCAGCTCTTATGCCTCTCAATCGGATTCCAAATGCAAATAGATGGAACAAGGTATCATCTCGAACTTCACATAGCATCAATTTCT CTTTATTATTTGAAAAGCGAGGAATTGGATTTCGAAATGGAATTGTTGCTGTTGCTGCCGCTGCTTCTCCTAGTCCAGTCAATGAAGATATATCTCAAAA AGAAACTCCCCAGAGAATTTATACATGGCCTGATAATAAGAAGCCAAAGGTGTGTATACTAGGTGGTGGATTTGGAGGCTTATATACTGCTTTAAGACTA GAATCACTTATTTGGGCTGACGACAAGAAGCCTCAGGTTCTTCTTGTCGACCAGTCTGAACGTTTTGTTTTCAAACCACTGTTGTATGAGCTTCTATCTG GAGAGGTGGATGCATGGGAAATTGCTCCCCGATTCTCAGAATTGCTTGCAAACACTGGCATACAGTTTCTCCGAGATAGGGTAAAGATGTTACATCCTGC TGATCACTTGGGCATGAATGGGTCAACAGGATCTTGTTCTGGAGGAACCGTGGTGCTTGAAAGCGGCCTTCTTATTGAATATGACTGGTTGGTTCTTTCT TTGGGGTCTGAAGCTAAACTTGATACTGTACCAGGTGCTGCAGAATTTGCATTTCCATTCTCCACTCTTGAGGATGCCTGTAAGGTTGACAATAAGTTGA AAGAATTAGAGAGGAGGAAGTTTGGCAAGGACTCTCTGATTCGTGTGGCTGTTGTCGGCTGTGGTTACTCTGGAGTTGAGTTGGCTGCTACAGTATCAGA GAGACTACAAGACAGAGGTTTAGTACAAGCCATTAATGTGAACACTACTATCTTGCCAACTGCCCCTCCTGGCAATAGGGAAGCTGCACTTAAAGTTCTT TCATCCAGGAAAGTCCAGCTTCTATTGGGTTATTTTGTACGCTGTATCAGGAAAGAGAGTGACTTGGAAGGTTCTGCAATGCCAACAGAGGCTGGGGTAT TTCCGAAAACACTAGCAGAACATGGTTCTGAGAAGTATATTTTGGAACTTCAACCTGCTGAAAGGGGATTACAGAGTCAGATTCTCGAAGCAGATCTAGT GTTATGGACTGTTGGGTCTCAACCCCCGCTTCCTCAATTGGAACCCTATGATAAGACCCACGAGCTTCCTCTAAATGGCCGGGGACAAGCAGAGACAGAT GAAACGCTCCGTGTCAAGGGCCATCCACGCATATTTGCACTTGGTGACTCTTCTGCTCTTAGGGACATGAATGGAAGGATTCTTCCAGCAACTGCTCAGG TTGCTTTCCAGCAGGCTGATTTTACTGGCTGGAATTTGTGGGCAGCGATTAATGACCGGCCTTTGTTGCCATTTAGGTTTCAGAATCTAGGTGAAATGAT GACTCTGGGAAGAAATGATGCTGCTCTTTCACCGAGTTTCATTGAAGGACTAACCTTAGAGGGTCCTGTTGGCCACGCTGCGAGGAAAATAGCCTATTTG ATTAGATTACCAACAGATGAGCACCGGCTTAAAGTGGGAATTAGCTGGCTTACAAAGTCAGCTGTAGATTCAGTTGCATCAATACAAAGCACCCTTAGTA AGGTTCTCTCAGGCTCGTAG
AA sequence Show only first row Show all	>Potri.007G098700.3 pacid=42765335 polypeptide=Potri.007G098700.3.p locus=Potri.007G098700 ID=Potri.007G098700.3.v4.1 annot-version=v4.1 MALAASALMPLNRIPNANRWNKVSSRTSHSINFSLLFEKRGIGFRNGIVAVAAAASPSPVNEDISQKETPQRIYTWPDNKKPKVCILGGGFGGLYTALRL ESLIWADDKKPQVLLVDQSERFVFKPLLYELLSGEVDAWEIAPRFSELLANTGIQFLRDRVKMLHPADHLGMNGSTGSCSGGTVVLESGLLIEYDWLVLS LGSEAKLDTVPGAAEFAFPFSTLEDACKVDNKLKELERRKFGKDSLIRVAVVGCGYSGVELAATVSERLQDRGLVQAINVNTTILPTAPPGNREAALKVL SSRKVQLLLGYFVRCIRKESDLEGSAMPTEAGVFPKTLAEHGSEKYILELQPAERGLQSQILEADLVLWTVGSQPPLPQLEPYDKTHELPLNGRGQAETD ETLRVKGHPRIFALGDSSALRDMNGRILPATAQVAFQQADFTGWNLWAAINDRPLLPFRFQNLGEMMTLGRNDAALSPSFIEGLTLEGPVGHAARKIAYL IRLPTDEHRLKVGISWLTKSAVDSVASIQSTLSKVLSGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08740		NDC1	NAD(P)H dehydrogenase C1 (.1)		Potri.007G098700 [exp]	0	1
AT1G73530			RNA-binding (RRM/RBD/RNP motif...		Potri.012G038200 [exp]	1.00	0.9512
AT4G21770			Pseudouridine synthase family ...		Potri.004G019100 [exp]	1.73	0.9413
AT1G22430			GroES-like zinc-binding dehydr...		Potri.018G142700 [exp]	3.31	0.9301	HNL.4
AT5G49890		ATCLC-C, CLC-C	chloride channel C (.1)		Potri.004G228300 [exp]	6.00	0.9208	CLC.4
AT5G04130		GYRB2	DNA GYRASE B2 (.1.2)		Potri.016G036200 [exp]	7.21	0.9439
AT1G19800		ABCI14, TGD1	ATP-binding cassette I14, trig...		Potri.002G234400 [exp]	10.48	0.9185
AT2G02740		WHY3, ATWHY3, P...	PLASTID TRANSCRIPTIONALLY ACTI...		Potri.008G149100 [exp]	12.96	0.9368
AT5G61490			Uncharacterised conserved prot...		Potri.014G057200 [exp]	14.28	0.9297
AT3G13490		ATKRS-2, OVA5	OVULE ABORTION 5, ARABIDOPSIS ...		Potri.003G221600 [exp]	15.49	0.9196
AT4G02790		EMB3129	EMBRYO DEFECTIVE 3129, GTP-bin...		Potri.005G209900 [exp]	15.65	0.9382

Compare expression of checked genes

Potri.007G098700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.