Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14880 159 / 8e-48 unknown protein AT4G18690 136 / 1e-38 unknown protein AT4G18680 119 / 3e-32 unknown protein AT5G45830 120 / 4e-32 ATDOG1, GSQ5, DOG1 GLUCOSE SENSING QTL 5, delay of germination 1 (.1) AT4G18650 118 / 6e-32 transcription factor-related (.1) AT1G58330 103 / 1e-26 ZW2 transcription factor-related (.1) AT1G09950 92 / 3e-22 RAS1 RESPONSE TO ABA AND SALT 1 (.1) AT4G18660 77 / 4e-17 unknown protein AT5G06950 77 / 3e-16 bZIP TGA2, AHBP-1B bZIP transcription factor family protein (.1.2.3.4) AT3G12250 72 / 2e-14 bZIP BZIP45, TGA6 TGACG motif-binding factor 6 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G390100 [exp] 160 / 2e-48 AT3G14880 255 / 3e-86 unknown protein Potri.004G058200 [exp] 140 / 3e-40 AT4G18650 226 / 1e-74 transcription factor-related (.1) Potri.005G170500 [exp] 76 / 2e-15 AT1G77920 468 / 5e-166 bZIP transcription factor family protein (.1) Potri.005G082000 [exp] 71 / 7e-14 AT5G65210 506 / 0.0 bZIP transcription factor family protein (.1.2.3.4.5.6) Potri.002G090700 [exp] 71 / 8e-14 AT1G77920 444 / 1e-156 bZIP transcription factor family protein (.1) Potri.007G085700 [exp] 70 / 2e-13 AT5G65210 523 / 0.0 bZIP transcription factor family protein (.1.2.3.4.5.6) Potri.007G079900 [exp] 69 / 2e-13 AT5G10030 339 / 5e-117 OCS ELEMENT BINDING FACTOR 4, TGACG motif-binding factor 4 (.1.2) Potri.001G029800 [exp] 70 / 3e-13 AT3G12250 423 / 4e-147 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.003G194600 [exp] 68 / 1e-12 AT3G12250 462 / 3e-162 TGACG motif-binding factor 6 (.1.2.3.4.5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042453 [exp] 276 / 5e-93 AT3G14880 145 / 3e-42 unknown protein Lus10039193 [exp] 262 / 1e-87 AT3G14880 135 / 5e-39 unknown protein Lus10013746 [exp] 250 / 3e-83 AT3G14880 141 / 5e-41 unknown protein Lus10039196 [exp] 237 / 6e-78 AT3G14880 135 / 1e-38 unknown protein Lus10013711 [exp] 163 / 2e-49 AT3G14880 251 / 2e-84 unknown protein Lus10015276 [exp] 139 / 1e-39 AT4G18690 204 / 6e-65 unknown protein Lus10026217 [exp] 124 / 6e-35 AT3G14880 83 / 7e-20 unknown protein Lus10028231 [exp] 125 / 1e-34 AT1G58330 154 / 8e-47 transcription factor-related (.1) Lus10029229 [exp] 120 / 1e-32 AT4G18650 207 / 2e-67 transcription factor-related (.1) Lus10007282 [exp] 116 / 4e-31 AT4G18650 208 / 2e-67 transcription factor-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14144 [poplar] [flax] DOG1 Seed dormancy control
Representative CDS sequence Show only first row Show all	>Potri.007G098800.1 pacid=42766530 polypeptide=Potri.007G098800.1.p locus=Potri.007G098800 ID=Potri.007G098800.1.v4.1 annot-version=v4.1 ATGTCCACGCTGCCAAGTAGTGCTGCATACCTTGTCTCCACCTCGACAAACAGCTCTCCTTCCCGTGAAACATTTCGCAAATTCTTCGAGTGCTGGCTTG CAGAGCAAAACAATTATCTCGAACAACTCATCTCAAGCTGTAAAGATTATGATCACAACAAAAAAAACTCCCCCCAATCATCTCAGGCAACCCTCCAGCC TCTTATCAACCGTGTTCTTGAGCATTATGAGCATTATTATAGAGCCAAGTCAAGATGGGCCAAAGATGATGTGTTATCCATGCTCTCACCTTCATGGACT AGTACTCTCGAGCATGCTTTTCTTTGGATTGGTGGGTGGCGGCCCTCTGTGGCTTTTCACTTGCTCTACTCAAAGTCAGGTCATCAGCTTGAGGCTCAAC TCCATGAGTTGATTTGTGGGTTGGGGACAGGTGACTTGGGTGACCTTTCAGCTAGTCAACTCACCCGAGTTGATCAGTTACAGAGGAAGACTATCAGGGA AGAGAACGAGCTGACTGAGAAGCATGTAAAGCATCAAGAAACTGTAGCAGACTCGTCTATGGTGGAGTTAGCACATGAGGTGACTGAGTTGTTGAGGAGT GAGAACACGGGTACTGATGAAGAGCGAGTTGAGTCAACTCTGGCACCTAGAAAGGATGGATTGCAGGAAATCTTGCAGATGGCTGATGATCTACGGGTGA GAACTATTAAAGGTGTTATCGATATTTTGACTCCAATCCAAGCCGTTCATTTCTTGATTGCTGCTGCTGAGTTGCACTTGCGCCTTCATGACTGGGGTAA GAAGGGTGATTGGGCACGCCGCGTCCACCACTGA
AA sequence Show only first row Show all	>Potri.007G098800.1 pacid=42766530 polypeptide=Potri.007G098800.1.p locus=Potri.007G098800 ID=Potri.007G098800.1.v4.1 annot-version=v4.1 MSTLPSSAAYLVSTSTNSSPSRETFRKFFECWLAEQNNYLEQLISSCKDYDHNKKNSPQSSQATLQPLINRVLEHYEHYYRAKSRWAKDDVLSMLSPSWT STLEHAFLWIGGWRPSVAFHLLYSKSGHQLEAQLHELICGLGTGDLGDLSASQLTRVDQLQRKTIREENELTEKHVKHQETVADSSMVELAHEVTELLRS ENTGTDEERVESTLAPRKDGLQEILQMADDLRVRTIKGVIDILTPIQAVHFLIAAAELHLRLHDWGKKGDWARRVHH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14880			unknown protein		Potri.007G098800 [exp]	0	1
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Potri.005G087500 [exp]	4.47	0.8134	ATH.1
AT3G57880			Calcium-dependent lipid-bindin...		Potri.011G052000 [exp]	10.53	0.8198
AT3G50150			Plant protein of unknown funct...		Potri.016G040100 [exp]	15.96	0.8222
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Potri.005G007200 [exp]	22.64	0.7459	EXT.9
AT3G07400			lipase class 3 family protein ...		Potri.002G249400 [exp]	23.55	0.7809
AT1G08200		AXS2	UDP-D-apiose/UDP-D-xylose synt...		Potri.004G189900 [exp]	30.74	0.7684	AXS1.2
AT3G12530		PSF2	PSF2 (.1.2)		Potri.008G056200 [exp]	37.52	0.7437
AT1G71360			Galactose-binding protein (.1)		Potri.019G068900 [exp]	45.16	0.7454
AT1G67040			unknown protein		Potri.017G116000 [exp]	45.69	0.7967
AT3G54650		FBL17	RNI-like superfamily protein (...		Potri.005G218400 [exp]	56.48	0.7866

Compare expression of checked genes

Potri.007G098800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.