Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08750 410 / 3e-143 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) AT5G63780 396 / 1e-137 SHA1 shoot apical meristem arrest 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G34200 58 / 1e-09 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G05830 58 / 1e-09 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G37950 56 / 5e-09 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G45530 55 / 2e-08 RING/U-box superfamily protein (.1) AT5G59000 54 / 2e-08 RING/FYVE/PHD zinc finger superfamily protein (.1) AT3G06330 55 / 3e-08 RING/U-box superfamily protein (.1.2.3) AT5G01070 50 / 4e-07 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G60580 50 / 1e-06 RING/U-box superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G070100 [exp] 615 / 0 AT5G08750 414 / 1e-144 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) Potri.010G195100 [exp] 59 / 5e-10 AT5G05830 206 / 9e-68 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.011G149200 [exp] 58 / 1e-09 AT2G45530 236 / 3e-78 RING/U-box superfamily protein (.1) Potri.004G059200 [exp] 58 / 3e-09 AT5G05830 107 / 3e-27 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.011G068800 [exp] 57 / 7e-09 AT5G05830 91 / 4e-21 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.008G062600 [exp] 55 / 9e-09 AT5G05830 211 / 7e-70 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G094000 [exp] 56 / 1e-08 AT5G05830 192 / 8e-62 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.016G105900 [exp] 54 / 3e-08 AT5G05830 191 / 2e-61 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.001G246700 [exp] 53 / 3e-08 AT5G59000 159 / 2e-49 RING/FYVE/PHD zinc finger superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021113 [exp] 59 / 6e-10 AT5G05830 167 / 7e-53 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10040240 [exp] 59 / 7e-10 AT5G05830 187 / 4e-60 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10028249 [exp] 57 / 3e-09 AT5G05830 184 / 8e-59 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10017197 [exp] 57 / 3e-09 AT5G05830 182 / 1e-57 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10016451 [exp] 56 / 4e-09 AT5G05830 164 / 1e-51 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10007293 [exp] 57 / 5e-09 AT2G34200 103 / 6e-27 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10040716 [exp] 56 / 5e-09 AT5G05830 159 / 1e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10035549 [exp] 56 / 9e-09 AT5G05830 157 / 4e-48 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10027744 [exp] 55 / 3e-08 AT5G05830 162 / 8e-50 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10029242 [exp] 55 / 3e-08 AT5G05830 101 / 3e-26 RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF12906 [poplar] [flax] RINGv RING-variant domain
Representative CDS sequence Show only first row Show all	>Potri.007G098900.2 pacid=42765389 polypeptide=Potri.007G098900.2.p locus=Potri.007G098900 ID=Potri.007G098900.2.v4.1 annot-version=v4.1 ATGGGTATGGAAAATTTATCACAACCAATCAGTGGTGGAATCAGGAATAATGGTCACTCACCTGGGAAGAGTGAAGATTCAGGGACTGACTCACGTTGCA GTCTAGATGCAGGTATGCCGACATGCCGTGTGTGCCAATGTGCTGAATCTGAAAAAAGGGGAGATGTTGCTTTGGGATTTTTGGGCATTGTTCCTCCATT GCAAGAAGCACGTAAAAGTAATGGAGCAGTAAAACCTGAAAGCAGAGAAGTCCCCTTGGACGCTGAAGCTGGTCAGTTTCATAGCAAAAATACTGGAAGA GAATCAGGGCTGGTTGAGTTCATCAGTCCTGGAGGGGAGGTTTTCATTTGTAATACAGATACAGATTTAGAAGTGGGTTTATGTCACCAGCAAGACTTGT TAATTGAACTTGGCTGCTCATGCAAAAATGATCTTGCCTTAGTACACTATGCATGTGCACTCAAGTGGTTCGTCAATCATGGATCCACTGTTTGTGAAAT CTGTGGACATGTTGCAATTAATATCAGAACTTTGGACTTTAAAAAGGTTATGGTTGCTTTGAAGGATTACGAAGCATTGAGGGAAAGGACTGCCATTGGA GATCCTAATCCTGCTCAGGTGCATACTAGTGCAGGTGTAGATCCTGATGCTGTTGCTGCTGTTAGAAGGCAACGGCTAAGTGAAATTTCATTGTGGTTTA GTCCACACAATAATCACAACAATAATTATAATAATAATAATTCTACTGCAGTTTCACAGGTTGTTTCTGAACAACCTCTGAATACTGTCATGGAAGATGT CCCTGCTGAGAATCCTGCAACTAAATGGGCTGTGGAAGCTACTGGTATTTTACTTGCTACAGGGCTTCTCACTGTTACTCTAGCATGGCTTATTGCTCCC CGTGTTGGAAAGAAAACTGCCAAAAGTGGTCTTCATATTCTCCTTGGAGGTGTTTGTGCTCTAACAGTGGTGGTCTTCTTTCGCTTTATTGTGCTGACCA GAATCAAATATGGACCTGCTCGCTACTGGGCTATCTTATTTGTCTTCTGGTTTCTTGTGTTTGGCATATGGGCATCACGGACACATGATGCTCATACTAC ATAG
AA sequence Show only first row Show all	>Potri.007G098900.2 pacid=42765389 polypeptide=Potri.007G098900.2.p locus=Potri.007G098900 ID=Potri.007G098900.2.v4.1 annot-version=v4.1 MGMENLSQPISGGIRNNGHSPGKSEDSGTDSRCSLDAGMPTCRVCQCAESEKRGDVALGFLGIVPPLQEARKSNGAVKPESREVPLDAEAGQFHSKNTGR ESGLVEFISPGGEVFICNTDTDLEVGLCHQQDLLIELGCSCKNDLALVHYACALKWFVNHGSTVCEICGHVAINIRTLDFKKVMVALKDYEALRERTAIG DPNPAQVHTSAGVDPDAVAAVRRQRLSEISLWFSPHNNHNNNYNNNNSTAVSQVVSEQPLNTVMEDVPAENPATKWAVEATGILLATGLLTVTLAWLIAP RVGKKTAKSGLHILLGGVCALTVVVFFRFIVLTRIKYGPARYWAILFVFWFLVFGIWASRTHDAHTT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08750			RING/FYVE/PHD zinc finger supe...		Potri.007G098900 [exp]	0	1
AT1G10020			Protein of unknown function (D...		Potri.009G084000 [exp]	3.31	0.6436
AT5G59020			Protein of unknown function (D...		Potri.009G039300 [exp]	14.38	0.6281
					Potri.001G053450 [exp]	51.43	0.5244
AT2G01170		BAT1	bidirectional amino acid trans...		Potri.008G125100 [exp]	55.24	0.5062
AT3G14470			NB-ARC domain-containing disea...		Potri.003G200200 [exp]	57.68	0.6072
AT5G26670			Pectinacetylesterase family pr...		Potri.010G004400 [exp]	68.41	0.6066
AT1G10020			Protein of unknown function (D...		Potri.001G288900 [exp]	75.89	0.5256
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.006G110000 [exp]	99.90	0.5677
AT4G01580	B3		AP2/B3-like transcriptional fa...		Potri.007G035700 [exp]	116.65	0.5537
AT3G46290		HERK1	hercules receptor kinase 1 (.1...		Potri.010G213200 [exp]	121.97	0.5168

Compare expression of checked genes

Potri.007G098900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.