Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22900 385 / 1e-121 ATCHX3 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) AT3G44900 374 / 1e-117 ATCHX4 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) AT2G13620 373 / 4e-117 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT1G08140 338 / 4e-104 ATCHX6a cation/H+ exchanger 6A, cation/H+ exchanger 6A, cation/H+ exchanger 6A (.1) AT2G28170 311 / 5e-94 ATCHX7 CATION/H+ EXCHANGER 7, Cation/hydrogen exchanger family protein (.1) AT3G44930 308 / 7e-93 ATCHX10 cation/H+ exchanger 10, cation/H+ exchanger 10, cation/H+ exchanger 10 (.1) AT5G22910 307 / 1e-92 ATCHX9 cation/H+ exchanger 9, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 9, cation/H+ exchanger 9 (.1) AT2G28180 304 / 4e-91 CHX08, ATCHX8 CATION/H+ EXCHANGER 8, Cation/hydrogen exchanger family protein (.1) AT1G08150 295 / 5e-88 ATCHX5 CATION/H+ EXCHANGER 5, Cation/hydrogen exchanger family protein (.1) AT3G44910 294 / 7e-88 ATCHX12 cation/H+ exchanger 12, cation/H+ exchanger 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G171200 [exp] 917 / 0 AT2G13620 360 / 4e-112 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.010G182900 [exp] 856 / 0 AT3G44900 365 / 1e-114 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.018G098300 [exp] 367 / 4e-115 AT5G22900 470 / 3e-154 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.010G183000 [exp] 358 / 9e-112 AT2G13620 474 / 8e-156 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G105200 [exp] 355 / 2e-110 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.019G123700 [exp] 350 / 1e-108 AT2G13620 536 / 4e-179 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.006G176400 [exp] 341 / 2e-105 AT3G44900 442 / 8e-144 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.013G153200 [exp] 323 / 2e-98 AT2G13620 427 / 2e-137 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.019G123800 [exp] 320 / 7e-98 AT2G13620 443 / 5e-144 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013423 [exp] 690 / 0 AT3G44900 375 / 2e-117 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10040963 [exp] 686 / 0 AT3G44900 376 / 2e-117 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10000161 [exp] 601 / 0 AT5G22900 320 / 6e-99 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10040961 [exp] 474 / 5e-161 AT5G22900 271 / 7e-83 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10000154 [exp] 373 / 5e-123 AT5G22900 216 / 2e-63 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10030013 [exp] 360 / 8e-112 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10035312 [exp] 360 / 3e-111 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10041344 [exp] 346 / 4e-107 AT5G22900 511 / 4e-170 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10037374 [exp] 335 / 6e-103 AT3G44900 502 / 8e-167 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10043128 [exp] 321 / 1e-97 AT3G44900 540 / 0.0 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [poplar] [flax] CPA_AT PF00999 [poplar] [flax] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Potri.007G099000.2 pacid=42765468 polypeptide=Potri.007G099000.2.p locus=Potri.007G099000 ID=Potri.007G099000.2.v4.1 annot-version=v4.1 ATGGAAACCCCAAAAATCCTCTTGAACGTAAGTGGTAACTGTCAAAATGTTCCTGCTTACTCCAATGGAATATGGAATGTAGCCCATGGAGAAACTATTC TCCAACATTCATTGGTTCGTTTCCATGTTCAATTACTAGCCATGTTTCTCCTCTCCAGCTCCTTTCACCTTTTGCTCCGTCGATTCCATTTATCACGTTT TACCTCAGAAATCCTGACAGGTATAGTATTGGGACCAGCTATAATGGGAAAATACTTTAACAATGCATCAAGCAAATTATTCCCACCCTATGAGGAGATC ATTATTTCATTATCAAAGTTTGGTTACGTGCTGTTCGCGTTCCTTGCTGGTGTAAGAATGGACCCAACCTTGATTGGGAAAACAGGAAGAACAGCCTTCA TTTTGGGGTTTATGTCGTCCGTCACTGCTTTCATTATCATAGAGTCTACTGGGTTCCTATTTCCTAAAGGATTGAAGACTGGTGGATCGAAAAACGCAAA GGTGATGTTTGCAAGAATATATATGGCTTGTATGATCCAGACCCAATTTGTTGGAGTCAGTTTCATTTTAATGCAACTGAAGATGATAAACTCACAGCTT GGACACATTGCTCTGGCATCGTCTTTGGTCAATGAATTGTTAAGGCTGGCATTTGGATTTATGTCCGGCTTCCTTTTTACCTTTAATGTTTCCGAACGGG CTGGAGTTCAGACCATTATTTTTTCCCTTATATTCGTCGTGTTAATTCTAACCCTAATGAAGCGACTCATGTTCGTAGTTGTTAGAATAACACCAGAAGG TCAGCCTGTGAAGGAAATCTATGCTACTGTTACTGTGGCAACGGTATTTTTAATTTCGACATGGGGTGACAGCATAGGGCTAAATTACCTGGCCGGCCCT TTGATACTCGGCTTAGTGCTGCCTGCAAGGTCTCCATTAGCTGAAATCCTGATAGCTAAGTTCGATACAATTGTTTCCGGGTTTCTTCTACCACTCATGG CAATGCTTTATGCATCAAAAGTCGATCTGTGGCAAATTATGAAAGAGTTTGACAGTCTTCTCATTTTTAAAATTTCGTTGATTGGATTCACAATGAAGGT GGTAGCAACTTTTTTTCTAGCAAAGTTTTGCAAGATACCTACAAGACATGCTGTTGCCCTCGCTTTGATTTTGAACGCCAAAGGGATCAATGAACTAGGA ACGTTAGGCAGCTACAGCACTTTTCGGGATATTCACTCAACCAGTGGGATTTTCTTGATATTTTTGCTCCAAGCGCTTCAGCCACTAGTCAAAATGCTCT ACCATCCTGCAGAGCATTACCTGAGCTACAAGAAAATGAGTGTTGAACATGCTTCAGGAGATGCAGAGCTCAAGATACTGACCTGTGCATATAGACAGGA AGATGCCGTTGCAGCAATCAAGCTACTAGAATATTCAAATCCTACACAAGAAAGTCCTTTGTCCATTCATGGACTCTGCCTAGAGGAACTTGTTAGCAGC TTTACACCTCTTTTAATAAACCATCAATTAGGCCAGAAGAACTCTTCTTCCAAAGGATCTCGCTCGCAACCCATCGTTGATATCTTCAGGTACTTGAAGT CAGAACTCAAGAAGTCAGTTCAAGTGCAAGTATTCACTGCAATATCACCGCTTAAACAGATGCACGAGGACATTTGTTGGCTCTCGTTCAACAAGTCCTG TTCCCTGATAGTGCTCCCATTTCATAAGAAATGGAACAGCAAAGGAAAAATGGTTTCAAACAATAATGATTTGAGGAATTTGAACATTAAAGTATTGGAA TTGGCCCCTTGTTCTGTAGGAATTCTTATCGATCGCAGTAGAGCACATGGCTTATCTTCTATTTTTATCACATCAGCGACATATAGAGTGGCAACAATAT TTGTTGGAGGCCCAGATGACAGGGAGGCACTGGCGTATGCCTTAAGGATGGCAAGATGCCCCAAAGTCCATCTAACAGTCGTGCGTTTCATCGGGCATGA TGATCACGCCCATCAAAGGTGGCAGTTTATGATAGATGAAGACCTTCTGAGAAGGCTGAGAACTGAAATGTCAGGGGGTAGTAATATAAATTACATTGAG AAGACGGTGAGAGATGGATCTGATACATCTTCCACAATTAAATCAATGGTTGGAGATCTTGATCTTATAATGGTAGGACGCAGCAGCCATGGAACTGAGT CTGAAGCTTTATCAGGCCTATCAGAATGGACTGATTTGCCAGAGCTTGGGCCGATAGGGGACCTGCTAGCTTCGGAAGATACCACTTGTCCAGTTTCAGT GTTGGTGGTTCAACAACAAATAAGAAAAGAGAGCCCTAAGATTGCTTGGAAATTCTGGTAG
AA sequence Show only first row Show all	>Potri.007G099000.2 pacid=42765468 polypeptide=Potri.007G099000.2.p locus=Potri.007G099000 ID=Potri.007G099000.2.v4.1 annot-version=v4.1 METPKILLNVSGNCQNVPAYSNGIWNVAHGETILQHSLVRFHVQLLAMFLLSSSFHLLLRRFHLSRFTSEILTGIVLGPAIMGKYFNNASSKLFPPYEEI IISLSKFGYVLFAFLAGVRMDPTLIGKTGRTAFILGFMSSVTAFIIIESTGFLFPKGLKTGGSKNAKVMFARIYMACMIQTQFVGVSFILMQLKMINSQL GHIALASSLVNELLRLAFGFMSGFLFTFNVSERAGVQTIIFSLIFVVLILTLMKRLMFVVVRITPEGQPVKEIYATVTVATVFLISTWGDSIGLNYLAGP LILGLVLPARSPLAEILIAKFDTIVSGFLLPLMAMLYASKVDLWQIMKEFDSLLIFKISLIGFTMKVVATFFLAKFCKIPTRHAVALALILNAKGINELG TLGSYSTFRDIHSTSGIFLIFLLQALQPLVKMLYHPAEHYLSYKKMSVEHASGDAELKILTCAYRQEDAVAAIKLLEYSNPTQESPLSIHGLCLEELVSS FTPLLINHQLGQKNSSSKGSRSQPIVDIFRYLKSELKKSVQVQVFTAISPLKQMHEDICWLSFNKSCSLIVLPFHKKWNSKGKMVSNNNDLRNLNIKVLE LAPCSVGILIDRSRAHGLSSIFITSATYRVATIFVGGPDDREALAYALRMARCPKVHLTVVRFIGHDDHAHQRWQFMIDEDLLRRLRTEMSGGSNINYIE KTVRDGSDTSSTIKSMVGDLDLIMVGRSSHGTESEALSGLSEWTDLPELGPIGDLLASEDTTCPVSVLVVQQQIRKESPKIAWKFW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Potri.007G099000 [exp]	0	1
AT5G15110			Pectate lyase family protein (...		Potri.008G148800 [exp]	2.23	0.7543
AT5G10820			Major facilitator superfamily ...		Potri.006G265500 [exp]	2.82	0.6654
AT3G60650			unknown protein		Potri.002G144400 [exp]	7.34	0.6164
AT3G12600		ATNUDT16	nudix hydrolase homolog 16 (.1...		Potri.016G036700 [exp]	9.00	0.6930
AT5G63390			O-fucosyltransferase family pr...		Potri.015G092600 [exp]	12.12	0.6069
AT2G24670	B3		Domain of unknown function (DU...		Potri.013G065401 [exp]	13.63	0.5920
AT4G34040			RING/U-box superfamily protein...		Potri.005G139900 [exp]	13.85	0.6044
AT1G50200		ACD, ALATS	Alanyl-tRNA synthetase (.1.2)		Potri.007G070250 [exp]	16.97	0.6318
					Potri.017G082950 [exp]	20.12	0.5957
AT1G53210			sodium/calcium exchanger famil...		Potri.004G052800 [exp]	25.78	0.6081

Compare expression of checked genes

Potri.007G099000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.