Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33490 520 / 0 Eukaryotic aspartyl protease family protein (.1.2) AT1G44130 395 / 1e-135 Eukaryotic aspartyl protease family protein (.1) AT1G77480 366 / 6e-124 Eukaryotic aspartyl protease family protein (.1.2) AT1G49050 259 / 2e-80 Eukaryotic aspartyl protease family protein (.1.2) AT1G65240 139 / 3e-36 Eukaryotic aspartyl protease family protein (.1) AT3G02740 137 / 2e-35 Eukaryotic aspartyl protease family protein (.1) AT5G36260 135 / 7e-35 Eukaryotic aspartyl protease family protein (.1) AT2G36670 127 / 7e-32 Eukaryotic aspartyl protease family protein (.1.2) AT1G05840 125 / 2e-31 Eukaryotic aspartyl protease family protein (.1) AT5G43100 112 / 1e-26 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G099301 [exp] 765 / 0 AT4G33490 503 / 6e-178 Eukaryotic aspartyl protease family protein (.1.2) Potri.005G069600 [exp] 717 / 0 AT4G33490 530 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.005G179900 [exp] 400 / 3e-137 AT1G44130 501 / 2e-177 Eukaryotic aspartyl protease family protein (.1) Potri.002G081400 [exp] 379 / 2e-128 AT1G44130 449 / 1e-156 Eukaryotic aspartyl protease family protein (.1) Potri.015G053300 [exp] 279 / 4e-88 AT1G49050 611 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.019G054900 [exp] 152 / 6e-41 AT3G02740 572 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G213600 [exp] 132 / 8e-34 AT5G22850 704 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G118800 [exp] 122 / 4e-30 AT2G36670 585 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.016G096700 [exp] 121 / 8e-30 AT2G36670 578 / 0.0 Eukaryotic aspartyl protease family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033503 [exp] 548 / 0 AT4G33490 560 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10020874 [exp] 548 / 0 AT4G33490 563 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10025687 [exp] 382 / 4e-130 AT1G77480 463 / 5e-162 Eukaryotic aspartyl protease family protein (.1.2) Lus10018146 [exp] 379 / 9e-129 AT1G77480 460 / 1e-160 Eukaryotic aspartyl protease family protein (.1.2) Lus10042982 [exp] 276 / 5e-87 AT1G49050 569 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10032485 [exp] 215 / 3e-64 AT1G49050 475 / 6e-163 Eukaryotic aspartyl protease family protein (.1.2) Lus10018148 [exp] 191 / 5e-57 AT1G44130 227 / 2e-71 Eukaryotic aspartyl protease family protein (.1) Lus10014391 [exp] 132 / 1e-33 AT2G36670 598 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10036430 [exp] 126 / 9e-32 AT3G02740 550 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10027732 [exp] 124 / 7e-31 AT2G36670 634 / 0.0 Eukaryotic aspartyl protease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF14543 [poplar] [flax] TAXi_N Xylanase inhibitor N-terminal
Representative CDS sequence Show only first row Show all	>Potri.007G099200.1 pacid=42764815 polypeptide=Potri.007G099200.1.p locus=Potri.007G099200 ID=Potri.007G099200.1.v4.1 annot-version=v4.1 ATGGGAAACGAAAAGGTGGGTTTTTGGGTGGTGGGGGTGTTAGTGCTAGTATTGATTTTAGGGTCATCAGCTGCTAGTGATGACAGGCAGCAAAGATGGA GAAAGGCTATGATGTCAGGTGAAACAATGGGTTCATCAATGTTGATGAATAGAGTTCCATCATCCATTGTCTTACCACTTCATGGGAATGTCTATCCTAC TGGGTTCTATAATGTGACCCTCAACATTGGCCAACCATCAAAACCTTACTTTCTCGATGTAGATACTGGAAGTGATCTTACATGGCTCCAATGTGATGCT CCCTGTGTCCATTGCACAGAGGCACCGCATCCATATTACAAACCCAGTAACAATCTAGTGGCTTGTAAGGACCCCATTTGTCAATCCTTGCACACCGGTG GTGACCAAAGATGTGAAAACCCAGGACAGTGTGACTATGAGGTTGAGTATGCTGATGGTGGATCATCCCTTGGCGTCCTTGTCAAGGATGCCTTTAATCT CAACTTTACAAGTGAAAAGCGCCAGAGTCCTCTTCTGGCCCTTGGGTGTGGATATGATCAGCTTCCTGGTGGGACTTATCATCCCATAGACGGAGTGCTT GGTCTTGGCCGGGGAAAACCTAGCATTGTATCACAGCTTAGTGGTCTGGGTTTAGTGAGAAATGTGATTGGACACTGTTTGAGTGGGCGCGGTGGAGGAT TCCTCTTCTTCGGGGATGATCTTTATGATTCATCTCGTGTAGCTTGGACACCAATGTCACCCAATGCGAAACACTATTCACCTGGATTTGCTGAATTGAC TTTTGATGGGAAAACTACTGGGTTCAAAAACCTGATCGTAGCTTTTGATAGTGGGGCCTCTTATACTTACCTTAATTCTCAGGTGTATCAAGGTCTAATT TCTCTGATAAAGAGAGAATTATCCACGAAGCCTTTGAGAGAAGCACTGGATGATCAGACGCTTCCGATTTGCTGGAAAGGACGGAAACCTTTCAAAAGCG TACGTGATGTCAAGAAATACTTCAAGACCTTTGCATTGAGCTTTGCGAATGACGGAAAATCTAAAACTCAGCTTGAATTCCCACCAGAAGCTTATCTTAT AGTATCATCTAAGGGAAACGCCTGCTTGGGAGTTCTAAATGGTACAGAAGTAGGTCTGAATGATCTGAATGTCATTGGAGACATATCAATGCAAGACAGA GTGGTGATTTATGACAACGAGAAGCAACTGATTGGATGGGCACCTGGAAATTGCGACAGGCTTCCTAAATCCAGAAGCATTATCATTTGA
AA sequence Show only first row Show all	>Potri.007G099200.1 pacid=42764815 polypeptide=Potri.007G099200.1.p locus=Potri.007G099200 ID=Potri.007G099200.1.v4.1 annot-version=v4.1 MGNEKVGFWVVGVLVLVLILGSSAASDDRQQRWRKAMMSGETMGSSMLMNRVPSSIVLPLHGNVYPTGFYNVTLNIGQPSKPYFLDVDTGSDLTWLQCDA PCVHCTEAPHPYYKPSNNLVACKDPICQSLHTGGDQRCENPGQCDYEVEYADGGSSLGVLVKDAFNLNFTSEKRQSPLLALGCGYDQLPGGTYHPIDGVL GLGRGKPSIVSQLSGLGLVRNVIGHCLSGRGGGFLFFGDDLYDSSRVAWTPMSPNAKHYSPGFAELTFDGKTTGFKNLIVAFDSGASYTYLNSQVYQGLI SLIKRELSTKPLREALDDQTLPICWKGRKPFKSVRDVKKYFKTFALSFANDGKSKTQLEFPPEAYLIVSSKGNACLGVLNGTEVGLNDLNVIGDISMQDR VVIYDNEKQLIGWAPGNCDRLPKSRSIII

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33490			Eukaryotic aspartyl protease f...		Potri.007G099200 [exp]	0	1
AT1G65810			P-loop containing nucleoside t...		Potri.004G077600 [exp]	3.16	0.9685
AT2G27140			HSP20-like chaperones superfam...		Potri.004G191200 [exp]	4.00	0.9713
AT5G37180		ATSUS5, SUS5	ARABIDOPSIS THALIANA SUCROSE S...		Potri.017G139100 [exp]	4.89	0.9712
AT1G54400			HSP20-like chaperones superfam...		Potri.013G054800 [exp]	6.00	0.9705
AT3G17380			TRAF-like family protein (.1)		Potri.008G099600 [exp]	6.92	0.9641
					Potri.005G047000 [exp]	6.92	0.9560
AT3G17380			TRAF-like family protein (.1)		Potri.003G103200 [exp]	7.74	0.9677
AT1G11570		NTL	NTF2-like (.1.2)		Potri.011G025500 [exp]	9.32	0.9368
AT4G03500			Ankyrin repeat family protein ...		Potri.011G016100 [exp]	9.48	0.9621
AT2G27140			HSP20-like chaperones superfam...		Potri.004G191101 [exp]	9.89	0.9651

Compare expression of checked genes

Potri.007G099200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.