Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33490 502 / 2e-177 Eukaryotic aspartyl protease family protein (.1.2) AT1G44130 384 / 2e-131 Eukaryotic aspartyl protease family protein (.1) AT1G77480 355 / 2e-119 Eukaryotic aspartyl protease family protein (.1.2) AT1G49050 253 / 5e-78 Eukaryotic aspartyl protease family protein (.1.2) AT1G65240 129 / 6e-33 Eukaryotic aspartyl protease family protein (.1) AT3G02740 127 / 5e-32 Eukaryotic aspartyl protease family protein (.1) AT2G36670 127 / 8e-32 Eukaryotic aspartyl protease family protein (.1.2) AT1G05840 123 / 9e-31 Eukaryotic aspartyl protease family protein (.1) AT5G36260 123 / 1e-30 Eukaryotic aspartyl protease family protein (.1) AT5G43100 114 / 3e-27 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G099200 [exp] 764 / 0 AT4G33490 521 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.005G069600 [exp] 694 / 0 AT4G33490 530 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.005G179900 [exp] 384 / 8e-131 AT1G44130 501 / 2e-177 Eukaryotic aspartyl protease family protein (.1) Potri.002G081400 [exp] 363 / 2e-122 AT1G44130 449 / 1e-156 Eukaryotic aspartyl protease family protein (.1) Potri.015G053300 [exp] 265 / 6e-83 AT1G49050 611 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.019G054900 [exp] 145 / 1e-38 AT3G02740 572 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G213600 [exp] 132 / 6e-34 AT5G22850 704 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G118800 [exp] 121 / 6e-30 AT2G36670 585 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.009G001700 [exp] 121 / 6e-30 AT5G22850 711 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020874 [exp] 534 / 0 AT4G33490 563 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10033503 [exp] 534 / 0 AT4G33490 560 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10025687 [exp] 365 / 2e-123 AT1G77480 463 / 5e-162 Eukaryotic aspartyl protease family protein (.1.2) Lus10018146 [exp] 361 / 5e-122 AT1G77480 460 / 1e-160 Eukaryotic aspartyl protease family protein (.1.2) Lus10042982 [exp] 268 / 8e-84 AT1G49050 569 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10032485 [exp] 207 / 3e-61 AT1G49050 475 / 6e-163 Eukaryotic aspartyl protease family protein (.1.2) Lus10018148 [exp] 185 / 1e-54 AT1G44130 227 / 2e-71 Eukaryotic aspartyl protease family protein (.1) Lus10014391 [exp] 130 / 6e-33 AT2G36670 598 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10027732 [exp] 124 / 8e-31 AT2G36670 634 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10035556 [exp] 121 / 2e-29 AT2G36670 623 / 0.0 Eukaryotic aspartyl protease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF14543 [poplar] [flax] TAXi_N Xylanase inhibitor N-terminal
Representative CDS sequence Show only first row Show all	>Potri.007G099301.1 pacid=42766069 polypeptide=Potri.007G099301.1.p locus=Potri.007G099301 ID=Potri.007G099301.1.v4.1 annot-version=v4.1 ATGGGAAAAGAAAAGGTGGGTCTTTGGGTGGTGGGGGTGTTAGTGCTAGTTTTGATTTTAGGGTTATCAGCTGCTAGTGATGACAGGCAGCAAAGATGGA GAAAGGCTATGATGTCAGGTGAAACAATGGGTTCATCAATGTTGATGAATAGAGTTCCATCATCCATTGTCTTACCACTTCATGGGAATGTCTATCCTAC TGGGTTCTATAATGTGACCCTCAACATTGGCCAACCATCAAAACCTTACTTTCTCGATGTAGATACTGGAAGTGATCTTACATGGCTCCAATGTGATGTT CCCCGTGCCCAATGCACAGAGGCTCCTCATCCATATTACAAACCCAGTAACAATCTAGTGGCTTGGAATGACCCCATTTGTCAATCTTTGCACACCGGTG GTGACCAAAGATGTGAAAACCCAGGGCAGTGTGACTATGAGGTTGAGTATGCTGATGGTGGATCATCCCTTGGCGTCCTTGTCAAGGATGCCTTTAATCT CAACTTTACAAGTGAAAAGCACCAGAGTCCTCTTCTGGCCCTTGGGTGTGGATATGATCAGCTTCCTGGTGGGACTTATCATCCCATAGACGGAGTGCTT GGTCTTGGCCGGGGAAAACCTAGCATTGTATCACAGCTTAGTAGTCTGGGTTTACTGAGAAATGTGATTGGACACTGTTTGAGTGGGCGCGGTGGAGGAT TCCTCTTCTTCGGGGATGATCTTTATGATTCATCTAGTGTAGCTTGGACACCAATGTCACCCAATGCGAAACACTATTCACCTGGATTCGCTGAATTGAC TTTTGATGGGAAAACTACTGGGTTCATAAACCTGATCGTAGCTTTTGACAGTGGGGCCTCTTATACTTACCTTAATTCTCAGGCGTATCAAGGTCTAATT TCTCTGATAAAGAGAGAATTATCCACGAAGCCTTTGAGAGAAGCACTGGATGATCAGACGCTTCCGATTTGCTGGAAAGGACGGAAACCTTTCAAAAGCG TACATGATGTCAACAAATACTTCAAGACCTTTGCATTGAGCTTTGCGAATGACGGAAAATCTAAAACTCAGCTTGAATTCCCACCAGAAGCTTATCTTAT AGTATCATCTAAGGGAAACGCCTGCTTGGGAGTTCTAAATGGTACAGAAGTAGGTCTGAATGATCTGAATGTCATTGGAGACATATCAATGCAAGACAGA GTGGTGATTTATGACAATGAGAAGCAACTGATTGGATGGGCACCTCGAAATTGCGACAGGATTCCTAAATCCAGAAGCATTATCATTTGA
AA sequence Show only first row Show all	>Potri.007G099301.1 pacid=42766069 polypeptide=Potri.007G099301.1.p locus=Potri.007G099301 ID=Potri.007G099301.1.v4.1 annot-version=v4.1 MGKEKVGLWVVGVLVLVLILGLSAASDDRQQRWRKAMMSGETMGSSMLMNRVPSSIVLPLHGNVYPTGFYNVTLNIGQPSKPYFLDVDTGSDLTWLQCDV PRAQCTEAPHPYYKPSNNLVAWNDPICQSLHTGGDQRCENPGQCDYEVEYADGGSSLGVLVKDAFNLNFTSEKHQSPLLALGCGYDQLPGGTYHPIDGVL GLGRGKPSIVSQLSSLGLLRNVIGHCLSGRGGGFLFFGDDLYDSSSVAWTPMSPNAKHYSPGFAELTFDGKTTGFINLIVAFDSGASYTYLNSQAYQGLI SLIKRELSTKPLREALDDQTLPICWKGRKPFKSVHDVNKYFKTFALSFANDGKSKTQLEFPPEAYLIVSSKGNACLGVLNGTEVGLNDLNVIGDISMQDR VVIYDNEKQLIGWAPRNCDRIPKSRSIII

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33490			Eukaryotic aspartyl protease f...		Potri.007G099301 [exp]	0	1
AT3G17380			TRAF-like family protein (.1)		Potri.008G005650 [exp]	1.00	0.9802
AT4G35000		APX3	ascorbate peroxidase 3 (.1)		Potri.005G112200 [exp]	2.00	0.9801
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Potri.013G119900 [exp]	2.23	0.9774
AT1G73370		ATSUS6, SUS6	ARABIDOPSIS THALIANA SUCROSE S...		Potri.015G029100 [exp]	2.44	0.9758
AT3G22400		ATLOX5, LOX5	Arabidopsis thaliana lipoxygen...		Potri.014G177200 [exp]	2.64	0.9706
AT1G73370		ATSUS6, SUS6	ARABIDOPSIS THALIANA SUCROSE S...		Potri.012G037200 [exp]	2.82	0.9776
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Potri.001G252300 [exp]	3.16	0.9677
AT3G50120			Plant protein of unknown funct...		Potri.001G071200 [exp]	6.78	0.9446
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Potri.001G468800 [exp]	7.48	0.9550
AT4G19090			Protein of unknown function (D...		Potri.012G018500 [exp]	8.77	0.9648

Compare expression of checked genes

Potri.007G099301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.