Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07710 745 / 0 Ankyrin repeat family protein (.1) AT5G60070 684 / 0 ankyrin repeat family protein (.1) AT5G02620 616 / 0 ATANK1, ANK1 ankyrin-like1 (.1) AT2G31820 555 / 0 Ankyrin repeat family protein (.1) AT1G05640 554 / 0 Ankyrin repeat family protein (.1) AT3G12360 404 / 5e-135 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT2G01680 392 / 4e-131 Ankyrin repeat family protein (.1) AT3G09550 380 / 1e-125 Ankyrin repeat family protein (.1) AT5G54710 137 / 3e-34 Ankyrin repeat family protein (.1) AT1G34050 131 / 2e-32 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G069300 [exp] 888 / 0 AT1G07710 695 / 0.0 Ankyrin repeat family protein (.1) Potri.005G069400 [exp] 813 / 0 AT1G07710 676 / 0.0 Ankyrin repeat family protein (.1) Potri.016G080700 [exp] 681 / 0 AT1G07710 570 / 0.0 Ankyrin repeat family protein (.1) Potri.006G214600 [exp] 677 / 0 AT1G07710 565 / 0.0 Ankyrin repeat family protein (.1) Potri.017G006800 [exp] 524 / 0 AT2G31820 868 / 0.0 Ankyrin repeat family protein (.1) Potri.007G145200 [exp] 514 / 9e-177 AT2G31820 751 / 0.0 Ankyrin repeat family protein (.1) Potri.010G106800 [exp] 400 / 4e-134 AT2G01680 778 / 0.0 Ankyrin repeat family protein (.1) Potri.008G134500 [exp] 390 / 2e-130 AT2G01680 750 / 0.0 Ankyrin repeat family protein (.1) Potri.008G048400 [exp] 390 / 2e-129 AT3G12360 862 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015224 [exp] 798 / 0 AT1G07710 727 / 0.0 Ankyrin repeat family protein (.1) Lus10005432 [exp] 790 / 0 AT1G07710 720 / 0.0 Ankyrin repeat family protein (.1) Lus10024440 [exp] 625 / 0 AT1G07710 618 / 0.0 Ankyrin repeat family protein (.1) Lus10025289 [exp] 603 / 0 AT1G07710 577 / 0.0 Ankyrin repeat family protein (.1) Lus10008329 [exp] 555 / 0 AT2G31820 854 / 0.0 Ankyrin repeat family protein (.1) Lus10027074 [exp] 442 / 3e-152 AT2G31820 626 / 0.0 Ankyrin repeat family protein (.1) Lus10003308 [exp] 404 / 8e-135 AT3G12360 981 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10025287 [exp] 395 / 8e-135 AT1G07710 403 / 2e-138 Ankyrin repeat family protein (.1) Lus10023460 [exp] 395 / 7e-132 AT3G12360 929 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10021814 [exp] 386 / 2e-128 AT2G01680 771 / 0.0 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF13637 [poplar] [flax] Ank_4 Ankyrin repeats (many copies) CL0465 [poplar] [flax] PF13962 [poplar] [flax] PGG Domain of unknown function
Representative CDS sequence Show only first row Show all	>Potri.007G099600.4 pacid=42765127 polypeptide=Potri.007G099600.4.p locus=Potri.007G099600 ID=Potri.007G099600.4.v4.1 annot-version=v4.1 ATGGATCCAATGGAGTCACCAGGCGGGCAGCCTAGTCCAGTGCCTAGGAAAAAGATGACCAAACAGTTAACAGGAAAAAGAGATGATACACCATTACATT CTGCAGCCAGAGCTGGGAATTTAGGCGCTGTAATGGAGATCTTAACTGGTACTGGAGAAGAAGAATTGAAGGAATTGTTAGAGAAGCAAAACCAATCAGG AGAAACTGCCCTTTATGTTGCTGCAGAATACGGTTATGTTGATGTGGTCAGAGAGATGATAAAGTATTATGATCTTGCTGATGCTGGTATCAAAGCAAGA AATGGGTTTGATGCATTCCATGTTGCTGCAAAGCAAGGGGATATAGAGATTCTGAGGGTGCTAATGGAGGCCCATCCGGAATTGTCTATGACTGTTGATT TATCAAACACTACAGCTCTGCACACGGCTGCCACACAAGGTCATATAGAAATTGTGAATTTTTTGTTGGATGCAGGGAGTAGCCTATCAACCATTGATAA AAGCAATGGAAAAACTGCCCTGCATTCTGCAGCTAGAAACGGGCATGTGGAAGTTGTGCGAGCACTTTTGACAATGGAGCCTGGGATAGCAACAAGGATA GATAAGAAGGGACAGACGGCACTTCACATGGCAGTGAAGGGACAAAATATTGAGGTGGTGGAGGAGCTGATTGTTGCAGATCCTTCAGCTGTAAACAGGA TTGATACTAAAGGCAACACACCCTTACATATAGCAACCAGGAAAGGACGAGCTCAGATTGTTAAGTTGCTTCTTCGGCATAGTAGAACCGATGTAAAGGC TGTTAATAGGACTACTGAAACTGCACTCGATACTGCTGAGAAAACAGGACATCCAGAAATTGCAGTCATTCTGCAGGAGCATGGGGTTCAAAGTGCCAAA ACGATTCAGCCACTGGAAATAAATCCAGCGCGAGAGCTGAAACAAACAGTAAGCGACGTGAAGCACGAAGTCCACCACCAACTGGAACACACACGTCAAA CTAGAAAGCGTGTGAAAGGAATCGCTAAACGTCTCAACAAAATGCATGTTGAAGGTCTTAACAATGCAATCAACTCCACCACTGTTGTTGCCGTTCTCAT TGCCTCAGTTGCCTTTGCAGCCATCTACACCGTCCCTGGTCAATATGTTGATGACCCTAACGAAATCCCCCCTGGACAGTCTTTAGGGGAAGCAAATATT GCTCCAAAAGTTCCATTCATCATATTCTTCATCTTTGATTCTACTGCCCTCTTCATCTCCCTGGCTGTTGTGGTGGTGCAAACATCAGTTGTAGCCATAG AGAGCAAAGCAAAAAAAAAGATGATGGCAGTCATAAACAAATTGATGTGGATAGCTTGTACCCTTGTTTCGGTCGCATTTCTAGCACTATCTTTCGTTGT TGTTGGTGAACGTGAGAAATGGTTGGCAATCGGTGTTACAATTGTAGGAGCATCTATAATGGCGACAACGTTCGGTACAATGTGTTACTGGGTGATAAAA CATCGAATTGAGGCCTCAAACATGAAGAATATTCGAAGATCATCACTTGGGAGCAGGTCACGCTCATTTTCAGTTTCTCTGGTCTCGGACACTGAGATCG TAAACAGTGACTACAAAAAAATGTATGCAATTTAA
AA sequence Show only first row Show all	>Potri.007G099600.4 pacid=42765127 polypeptide=Potri.007G099600.4.p locus=Potri.007G099600 ID=Potri.007G099600.4.v4.1 annot-version=v4.1 MDPMESPGGQPSPVPRKKMTKQLTGKRDDTPLHSAARAGNLGAVMEILTGTGEEELKELLEKQNQSGETALYVAAEYGYVDVVREMIKYYDLADAGIKAR NGFDAFHVAAKQGDIEILRVLMEAHPELSMTVDLSNTTALHTAATQGHIEIVNFLLDAGSSLSTIDKSNGKTALHSAARNGHVEVVRALLTMEPGIATRI DKKGQTALHMAVKGQNIEVVEELIVADPSAVNRIDTKGNTPLHIATRKGRAQIVKLLLRHSRTDVKAVNRTTETALDTAEKTGHPEIAVILQEHGVQSAK TIQPLEINPARELKQTVSDVKHEVHHQLEHTRQTRKRVKGIAKRLNKMHVEGLNNAINSTTVVAVLIASVAFAAIYTVPGQYVDDPNEIPPGQSLGEANI APKVPFIIFFIFDSTALFISLAVVVVQTSVVAIESKAKKKMMAVINKLMWIACTLVSVAFLALSFVVVGEREKWLAIGVTIVGASIMATTFGTMCYWVIK HRIEASNMKNIRRSSLGSRSRSFSVSLVSDTEIVNSDYKKMYAI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07710			Ankyrin repeat family protein ...		Potri.007G099600 [exp]	0	1
AT1G75500		WAT1	Walls Are Thin 1 (.1.2)		Potri.002G029100 [exp]	15.65	0.6981
AT1G05460		SDE3	SILENCING DEFECTIVE, P-loop co...		Potri.008G155400 [exp]	16.73	0.6520	RHEL901,SDE3.1
AT3G05936			unknown protein		Potri.005G000800 [exp]	17.66	0.6568
AT1G51600	GATA	GATA28, TIFY2A,...	GATA TRANSCRIPTION FACTOR 28, ...		Potri.017G042300 [exp]	19.54	0.5337
AT5G41760			Nucleotide-sugar transporter f...		Potri.003G136800 [exp]	28.98	0.6192
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Potri.005G247100 [exp]	33.22	0.6564
AT1G61900			unknown protein		Potri.011G003000 [exp]	36.93	0.6231
AT3G61920			unknown protein		Potri.002G178900 [exp]	38.15	0.6555
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.002G076766 [exp]	45.90	0.5918
AT2G26770		SCAB1	stomatal closure-related actin...		Potri.009G066800 [exp]	46.45	0.6369

Compare expression of checked genes

Potri.007G099600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.