Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 562 / 0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 399 / 6e-119 transmembrane receptors;ATP binding (.1.2) AT5G17680 390 / 2e-116 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G18360 360 / 3e-108 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G11170 357 / 9e-106 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G19510 358 / 2e-105 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT5G41750 355 / 3e-105 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G46450 355 / 7e-105 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G38340 351 / 6e-104 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G27180 358 / 8e-104 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G028750 [exp] 1025 / 0 AT5G36930 516 / 3e-163 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G018800 [exp] 928 / 0 AT5G36930 512 / 7e-163 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.002G056100 [exp] 758 / 0 AT5G36930 591 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G009251 [exp] 754 / 0 AT5G36930 508 / 1e-160 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G008164 [exp] 748 / 0 AT5G36930 491 / 3e-154 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G012475 [exp] 733 / 0 AT5G36930 431 / 1e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G009400 [exp] 733 / 0 AT5G36930 504 / 4e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G008292 [exp] 730 / 0 AT5G36930 454 / 2e-140 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G008868 [exp] 728 / 0 AT5G36930 471 / 1e-146 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005171 [exp] 974 / 0 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10011741 [exp] 879 / 0 AT5G36930 540 / 4e-172 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10033825 [exp] 566 / 0 AT5G36930 400 / 3e-123 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10039850 [exp] 548 / 3e-175 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10018616 [exp] 546 / 8e-174 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10011104 [exp] 492 / 1e-154 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029722 [exp] 431 / 9e-133 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10003749 [exp] 418 / 3e-126 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10001375 [exp] 404 / 2e-120 AT5G36930 464 / 3e-141 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10041060 [exp] 401 / 3e-120 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.007G099700.6 pacid=42765893 polypeptide=Potri.007G099700.6.p locus=Potri.007G099700 ID=Potri.007G099700.6.v4.1 annot-version=v4.1 ATGGCTACTGCAATACCCCAAGATGAAGCCTCTTCTTCAAAGAGTAGATGCGCTTACCAAGTGTTCTTGAGTTTTAGAGGTGAAGACACCCGCAAGAACT TTACCGATCACCTCCACACAGCTTTAGTACAAGCAGGATTTCACACATTTAGAGATGATGATGAAATTCAGAGAGGGGAGAACATTGAGATAGAAATCCA AAAAGCAATAAAAGAGTCAAGAATGTCTATAATTGTCTTCTCTAAAGATTATGCCTCATCAACATGGTGTCTCGATGAACTAGTGATGATCATGGAGCAT AAAAAACTTGGTGGGTGGCATGTTGTTTTGCCAATTTTCTATGATTTGGATCCATCTCATGTCAGTAACCAGACAGGGAGTTTTGCTGAAGCTTTTGTTA GGCATGAAGAGCGGTTCAAAAAGGAGGACAGAGTGGAGGGTTGGAGGATGGCTCTGAAGGAAGTTGCTGATCTTGGAGGGATGGTTTTACAAGATGGGTA TGAATCTAAATTTATTCAGAATGTTGTTAAAGAGGTTGGAAATAGATTGAATCGCAAGATACTAAATGTTGAGCCCTATTTAGTCGGAATAGATTCCCGT GTAAGACTCATCAATTTGTGGTTACGAGATGGATCAGATGATGTTGGCATAGCAACAATCTATGGGATTGGGGGCATTGGAAAGACAACCATTGCGAAGA GAGTATATAATCAAAACTGCCACAATTTTGAGGGAAGTAGCTTTCTCGCTAATATTAGGGAAATTTCAGAGCAACCTAATGGTCTGGTTCGTTTGCAGAA GCAACTTTTTTCAGATGTCACAAAGAGAAAAGCAGGTAAATTTCACAGTATAGATGAAGGGATCATTATGATCAAAGATGCTTTTTGTTGCAAAAGAGTT CTTCTTATTCTAGATGATGTCGATCAATTAGACCAAGTTAGTGCAATAATTGGAATGCGACAATGGTTTTACCAGGGAAGTAAAATTATCATAACAACGA GGCATGAACGTTTGCTAAGGGCTGATGAAGTTAGTGTAATGTTCAAAGTCCAGCAATTGAATGAGAATGAATCGCTTCAGCTTTTCAGTTGGCATGCTTT TGGCCAAAATCAACCTTTGCATGGTTATGAGATGTACTCTGAGAATGTGGTGAATCACTGTGGTGGAATTCCATTGGCTCTTCAAGTTTTGGGTTCTTCT TTACATGGTCAACCTGTGGAATTATGGAGAAGAGCATTACAGGAACCAGAAGCCATTGATGATGGTAAGATTCAAAAGATTCTTAGAAGAAGCTTTGACT CCCTACAAGATGATCGCGACAAAAATCTGTTCCTTGACATAGCTTGTTTCTTCATTGGAAAGGATAAGGATTATTTAGATAGAATAGTTGAAGGCTGTGA TTTCTACAGGGTACTTGGAATTCAGAAACTCGTCGATAGATGTCTAATAACAATTGACAAAGACAAGATATTGATGATGCATCAATCACTTAGAGACATG GGAAGGGAAATTGTTCGCCAAGAATCACCCGATGACCTTGGGAAACGTAGCAGACTGTGGCGTCACAAGGATTCATTCAGTGTTTTGAGAAAAAATACTG GTACACGTGCTGTTAAGAGCCTCATACTCGACCAACAACAGATAAGCACGGCATTGGCAAATAATGCAGACTTGCAAACTAAGGCATTTGCAGAAATGAG CAATTTAAAACTGCTTGATCTCAATAATGTAAAGCTTAAGGGAAGTTATGCAGATTTTCCTAAGAGTTTAGTGTGGATGCGCTGGCATGGATTCTCTTTG AATTTTATACCAGATAATTTTTCCCTAGAAGATCTGATTGTTCTTGATATGCACAAGAGTAGTCTAAAACGTGTTTGGAGGAAAACCCAGGCTCTTGAAA ATTTGAAAATTCTTGATCTCAGTCATTCACATGGTCTAGTAAATACCTCTGACCTATCAGGACTGCCTAGTCTTGAAAGGCTGATTCTTAAATATTGCAT AAGTTTGATTGAGGTTCACGAATCCATTGGAAATCTGGGAAGCCTTTTTCTCTTAAATCTGAAAGGCTGCAAAAATCTCATAAAGCTTCCTAGGAGCATT GGTTTGTTGAAATCACTTGACAAACTTATTTTATCTGGATGCTCCAAACTTGATGAGCTACCTGAGGAGCTACAAACATTGCAATGCTTAAGGGTGCTTC GTGCTGATGAAACTTCCATAAATCGGCTACAGTCATGGCAATTAAATTGGTGGTCTTGGTTATTTCCAAGAAGAAGTCTACAATCCACTAGCTTTTCGTT CACTTTTCTACCATGTTCTCTGGTAAAGTTAAGTCTTGCTGATTGCAATATAACAGATGATGTTATTCCTGATGATCTTAGCAGCCTGCCTGCCTTGGAG CACTTAAACCTGAGTAAAAACCCAATTCAAACCCTACCAGAAAGCATGAATAGCCTCTCTATGCTACAGGACCTTCTGTTAAACCACTGCAGAAGTCTCC GATCACTTCCTGAACTTCCAACAAGCTTAAAGAAGTTGAGGGCAGAAAAATGTACGAAGTTGGAAAGAATTGCAAATTTGCCAAATTTGTTGAGATCCTT GAGACTTAATCTTATTGGTTGTAAAAGACTAGTTCAGGTTCAAGGCTTGTTCAACTTAGAAATGATGAGAGAATTTGATGCCAAAATGATCTATAACCTG CACCTGTTCAATATAGAATCTTTAGGTAGCATTGAAGTGGAAATGATCAATTCTATCACAAAGACATCAAGGATAACTCGCCTCCAGATATTGCAAGAAC AAGGCATATTTAGCATTTTTCTTCCTGGAAGTGAGGTTCCAAGTTGGTACAGCCATCAAAAGCAGAACAATTCAGTATCGTTTGCCGTGCCTCCACTTCC AAGTCGCAAGATTCGTGGATTAAACTTATGCATTGTATATGGATTACGCAATACAGATAAGAAATGTGCTACTCTATATCCACCTGATGCTGAAATCAGC AACAAAACCAAGGTTTTGAAATGGAGCTATAATCCAATAGTCTACGGGGTACCACAAATTGGTGAAGATATGTTATGGTTAAGCCATTGGAGGTTTGGTA CTGATCAATTGGAAGTTGGGGATCAAGTGAATGTTTCAGCATCTGTGACACCTGATTTTCAAGTAAAGAAGTGTGGAGTACATCTTGTCTATGAACAAGA AGATAATTATACTCTGTTAAACAATGAAGAAATAGTCCAGAGTAGCTCTATTGGATTCCAAACTCTTGTCAAGAAACATGTTTTAGAACATCCAGTATCA CGTGTATTTGATGTCTGA
AA sequence Show only first row Show all	>Potri.007G099700.6 pacid=42765893 polypeptide=Potri.007G099700.6.p locus=Potri.007G099700 ID=Potri.007G099700.6.v4.1 annot-version=v4.1 MATAIPQDEASSSKSRCAYQVFLSFRGEDTRKNFTDHLHTALVQAGFHTFRDDDEIQRGENIEIEIQKAIKESRMSIIVFSKDYASSTWCLDELVMIMEH KKLGGWHVVLPIFYDLDPSHVSNQTGSFAEAFVRHEERFKKEDRVEGWRMALKEVADLGGMVLQDGYESKFIQNVVKEVGNRLNRKILNVEPYLVGIDSR VRLINLWLRDGSDDVGIATIYGIGGIGKTTIAKRVYNQNCHNFEGSSFLANIREISEQPNGLVRLQKQLFSDVTKRKAGKFHSIDEGIIMIKDAFCCKRV LLILDDVDQLDQVSAIIGMRQWFYQGSKIIITTRHERLLRADEVSVMFKVQQLNENESLQLFSWHAFGQNQPLHGYEMYSENVVNHCGGIPLALQVLGSS LHGQPVELWRRALQEPEAIDDGKIQKILRRSFDSLQDDRDKNLFLDIACFFIGKDKDYLDRIVEGCDFYRVLGIQKLVDRCLITIDKDKILMMHQSLRDM GREIVRQESPDDLGKRSRLWRHKDSFSVLRKNTGTRAVKSLILDQQQISTALANNADLQTKAFAEMSNLKLLDLNNVKLKGSYADFPKSLVWMRWHGFSL NFIPDNFSLEDLIVLDMHKSSLKRVWRKTQALENLKILDLSHSHGLVNTSDLSGLPSLERLILKYCISLIEVHESIGNLGSLFLLNLKGCKNLIKLPRSI GLLKSLDKLILSGCSKLDELPEELQTLQCLRVLRADETSINRLQSWQLNWWSWLFPRRSLQSTSFSFTFLPCSLVKLSLADCNITDDVIPDDLSSLPALE HLNLSKNPIQTLPESMNSLSMLQDLLLNHCRSLRSLPELPTSLKKLRAEKCTKLERIANLPNLLRSLRLNLIGCKRLVQVQGLFNLEMMREFDAKMIYNL HLFNIESLGSIEVEMINSITKTSRITRLQILQEQGIFSIFLPGSEVPSWYSHQKQNNSVSFAVPPLPSRKIRGLNLCIVYGLRNTDKKCATLYPPDAEIS NKTKVLKWSYNPIVYGVPQIGEDMLWLSHWRFGTDQLEVGDQVNVSASVTPDFQVKKCGVHLVYEQEDNYTLLNNEEIVQSSSIGFQTLVKKHVLEHPVS RVFDV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G36930			Disease resistance protein (TI...		Potri.007G099700 [exp]	0	1
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014338 [exp]	2.00	0.8818
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014326 [exp]	2.44	0.8654
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014348 [exp]	2.44	0.8674
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014352 [exp]	4.47	0.8367
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014304 [exp]	5.91	0.7929
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014380 [exp]	6.32	0.8255
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014308 [exp]	6.48	0.8127
AT5G61910			DCD (Development and Cell Deat...		Potri.012G108200 [exp]	6.48	0.7488	Pt-BON1.3
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Potri.012G094600 [exp]	6.92	0.7627
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014318 [exp]	9.38	0.7828

Compare expression of checked genes

Potri.007G099700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.