Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-GAL1.5
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63810 1084 / 0 BGAL10 beta-galactosidase 10 (.1) AT4G36360 919 / 0 BGAL3 beta-galactosidase 3 (.1.2) AT3G13750 906 / 0 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT2G28470 897 / 0 BGAL8 beta-galactosidase 8 (.1.2) AT2G32810 794 / 0 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2) AT1G45130 781 / 0 BGAL5 beta-galactosidase 5 (.1) AT3G52840 775 / 0 BGAL2 beta-galactosidase 2 (.1) AT4G26140 758 / 0 BGAL12 beta-galactosidase 12 (.1.2) AT5G56870 756 / 0 BGAL4 beta-galactosidase 4 (.1) AT5G20710 729 / 0 BGAL7 beta-galactosidase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G232600 [exp] 922 / 0 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.007G018100 [exp] 902 / 0 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2) Potri.001G200400 [exp] 901 / 0 AT3G13750 1471 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.009G012400 [exp] 900 / 0 AT2G28470 1281 / 0.0 beta-galactosidase 8 (.1.2) Potri.006G144500 [exp] 896 / 0 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.003G038500 [exp] 894 / 0 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.004G159800 [exp] 816 / 0 AT4G36360 1137 / 0.0 beta-galactosidase 3 (.1.2) Potri.011G044300 [exp] 811 / 0 AT2G28470 993 / 0.0 beta-galactosidase 8 (.1.2) Potri.017G057900 [exp] 800 / 0 AT2G32810 1351 / 0.0 beta-galactosidase 9, beta galactosidase 9 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022645 [exp] 1226 / 0 AT5G63810 1058 / 0.0 beta-galactosidase 10 (.1) Lus10003343 [exp] 1219 / 0 AT5G63810 1054 / 0.0 beta-galactosidase 10 (.1) Lus10025108 [exp] 1100 / 0 AT5G63810 949 / 0.0 beta-galactosidase 10 (.1) Lus10023977 [exp] 976 / 0 AT5G63810 822 / 0.0 beta-galactosidase 10 (.1) Lus10025110 [exp] 909 / 0 AT5G63810 851 / 0.0 beta-galactosidase 10 (.1) Lus10041798 [exp] 905 / 0 AT4G36360 1443 / 0.0 beta-galactosidase 3 (.1.2) Lus10015625 [exp] 902 / 0 AT3G13750 1417 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10025980 [exp] 895 / 0 AT4G36360 1422 / 0.0 beta-galactosidase 3 (.1.2) Lus10037644 [exp] 894 / 0 AT3G13750 1432 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10000701 [exp] 880 / 0 AT3G13750 1481 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF01301 [poplar] [flax] Glyco_hydro_35 Glycosyl hydrolases family 35 CL0058 [poplar] [flax] PF02140 [poplar] [flax] Gal_Lectin Galactose binding lectin domain
Representative CDS sequence Show only first row Show all	>Potri.007G099800.1 pacid=42766536 polypeptide=Potri.007G099800.1.p locus=Potri.007G099800 ID=Potri.007G099800.1.v4.1 annot-version=v4.1 ATGGCACTCGGTCTCATTTTCTTTTTCTCTTTGTGTTTCACATTGTGTTTTGCGGGCAATGTGAGCTATGATAGTAGGTCTTTGATCATCAATGGTGAAA GAAAGCTTCTTATTTCTGCTGCCATTCATTATCCTCGCAGTGTCCCTGCGATGTGGCCAGAGCTGGTAAAAACAGCTAAGGAAGGAGGGGTGGATGTGAT TGAAACATATGTATTTTGGAATGTTCATCAGCCTACTTCTCCTTCCGAGTATCATTTCGATGGAAGATTCGATCTGGTCAAGTTTATAAATATTGTCCAG GAGGCTGGGATGTATTTAATCCTTCGGATTGGCCCATTCGTTGCAGCTGAATGGAATTTTGGGGGTATACCTGTCTGGTTGCATTACGTTAATGGAACTG TCTTCCGGACTGATAATTATAATTTCAAGTACTACATGGAGGAATTCACGACATACATAGTTAAGCTAATGAAGAAAGAAAAGCTCTTTGCATCGCAGGG GGGTCCCATAATTTTGTCTCAGGTTGAAAATGAATATGGATACTATGAAGGTGCTTATGGAGAAGGTGGAAAGCGATATGCTGCATGGGCAGCACAAATG GCTGTTTCTCAAAATACAGGCGTGCCTTGGATAATGTGCCAGCAGTTCGACGCTCCTCCCTCTGTGATAAATACTTGTAATTCCTTCTACTGTGATCAGT TTAAACCTATTTTTCCAGACAAGCCTAAAATTTGGACTGAGAATTGGCCTGGATGGTTTCAGACATTTGGGGCCCCTAATCCTCACAGGCCAGCTGAAGA TGTTGCTTTCTCTGTTGCTCGCTTTTTCCAGAAAGGTGGCAGTGTACAAAATTATTACATGTACCATGGAGGAACAAATTTTGGGCGCACTGCAGGTGGA CCATTCATTACAACAAGTTATGATTATGAGGCACCAATTGATGAATATGGTTTGCCTAGGCTACCAAAGTGGGGACACCTGAAGGAACTTCATAAAGCTA TAAAGTTATGTGAGCATGTCCTACTGAACAGCAAGCCAGTTAATTTATCACTGGGTCCTTCCCAAGAGGCCGACGTCTATGCTGATGCATCAGGTGGTTG TGTTGCTTTCCTTGCTAACATAGATGATAAAAATGACAAGACAGTTGACTTTCAGAATGTGTCATATAAGCTGCCAGCCTGGTCAGTTAGCATTCTGCCT GACTGCAAGAATGTAGTATATAACACTGCAAAGGTAACTTCCCAGACTGCTTTAGTTGAAATGGTACCTGACAATTTACAGCAAAAGGATGGCTCAAAAG CTCTTAAATGGGAAGTATTCGTGGAGAAAGCTGGGATTTGGGGAGAACCTGACTTCATGAAAAATGGTTTTGTGGATCATATCAACACCACAAAAGATAC CACGGACTACCTCTGGTACACAACAAGTATTGTTGTTGGTGAAAATGAAGAGTTCTTGAAAGAGGGAAGACATCCAGTTCTTCTTATTGAATCAATGGGT CATGCTCTTCATGCTTTTGTGAATCAGGAACTTCAAGGTAGTGCATCTGGAAATGGCTCGCATTCACCCTTCAAATTTAAGAATCCCATATCTCTCAAGG CAGGGAAGAATGAAATTGCTCTCCTAAGCATGACTGTTGGCCTACCAAATGCAGGCTCATTTTACGAATGGGTAGGAGCTGGACTAACAAGTGTTAGGAT TGAAGGATTCAACAATGGCACTGTTGACTTGTCTCATTTTAACTGGATCTATAAGATTGGGTTGCAAGGAGAAAAGCTTGGTATATACAAGCCTGAGGGA GTGAATAGTGTAAGTTGGGTTGCAACATCAGAACCACCAAAGAAGCAACCTTTGACATGGTACAAGGTTGTTCTTGACCCACCAGCAGGGAATGAACCTG TTGGGCTGGATATGCTTCATATGGGAAAGGGTCTAGCTTGGTTGAATGGAGAAGAAATTGGAAGATACTGGCCCAGGAAAAGTTCTGTTCATGAAAAGTG TGTTACAGAATGCGACTATAGAGGCAAATTCATGCCAGACAAATGCTTTACTGGGTGTGGTCAACCAACACAAAGATGGTACCATGTTCCACGTTCTTGG TTCAAGCCATCTGGAAACTTGCTGGTGATTTTTGAGGAGAAAGGTGGAGATCCAGAAAAAATTACATTCTCGAGACGAAAAATGTCCAGCATATGTGCTC TCATCGCCGAGGATTACCCCTCAGCTGATCGAAAATCATTGCAGGAAGCTGGAAGCAAGAACTCCAATTCCAAGGCCTCTGTCCATTTGGGGTGCCCCCA AAATGCCGTTATATCAGCTGTAAAATTTGCCAGTTTTGGAACTCCTACTGGAAAATGCGGATCTTACAGCGAGGGAGAATGCCACGACCCCAATTCCATT TCTGTTGTTGAAAAGGCCTGTCTAAACAAAACCGAGTGCACTATAGAACTAACAGAGGAGAACTTCAACAAGGGTTTGTGTCCAGACTTCACCAGGAGAC TTGCTGTTGAAGCAGTATGCAGCTGA
AA sequence Show only first row Show all	>Potri.007G099800.1 pacid=42766536 polypeptide=Potri.007G099800.1.p locus=Potri.007G099800 ID=Potri.007G099800.1.v4.1 annot-version=v4.1 MALGLIFFFSLCFTLCFAGNVSYDSRSLIINGERKLLISAAIHYPRSVPAMWPELVKTAKEGGVDVIETYVFWNVHQPTSPSEYHFDGRFDLVKFINIVQ EAGMYLILRIGPFVAAEWNFGGIPVWLHYVNGTVFRTDNYNFKYYMEEFTTYIVKLMKKEKLFASQGGPIILSQVENEYGYYEGAYGEGGKRYAAWAAQM AVSQNTGVPWIMCQQFDAPPSVINTCNSFYCDQFKPIFPDKPKIWTENWPGWFQTFGAPNPHRPAEDVAFSVARFFQKGGSVQNYYMYHGGTNFGRTAGG PFITTSYDYEAPIDEYGLPRLPKWGHLKELHKAIKLCEHVLLNSKPVNLSLGPSQEADVYADASGGCVAFLANIDDKNDKTVDFQNVSYKLPAWSVSILP DCKNVVYNTAKVTSQTALVEMVPDNLQQKDGSKALKWEVFVEKAGIWGEPDFMKNGFVDHINTTKDTTDYLWYTTSIVVGENEEFLKEGRHPVLLIESMG HALHAFVNQELQGSASGNGSHSPFKFKNPISLKAGKNEIALLSMTVGLPNAGSFYEWVGAGLTSVRIEGFNNGTVDLSHFNWIYKIGLQGEKLGIYKPEG VNSVSWVATSEPPKKQPLTWYKVVLDPPAGNEPVGLDMLHMGKGLAWLNGEEIGRYWPRKSSVHEKCVTECDYRGKFMPDKCFTGCGQPTQRWYHVPRSW FKPSGNLLVIFEEKGGDPEKITFSRRKMSSICALIAEDYPSADRKSLQEAGSKNSNSKASVHLGCPQNAVISAVKFASFGTPTGKCGSYSEGECHDPNSI SVVEKACLNKTECTIELTEENFNKGLCPDFTRRLAVEAVCS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Potri.007G099800 [exp]	0	1	Pt-GAL1.5
AT5G59350			unknown protein		Potri.001G238300 [exp]	6.00	0.7309
AT4G35320			unknown protein		Potri.004G207500 [exp]	33.39	0.7462
AT5G57670			Protein kinase superfamily pro...		Potri.006G173700 [exp]	34.17	0.7342
AT2G46760			D-arabinono-1,4-lactone oxidas...		Potri.002G178400 [exp]	50.07	0.6869
AT1G33470			RNA-binding (RRM/RBD/RNP motif...		Potri.013G094400 [exp]	50.27	0.6796
AT2G30700			unknown protein		Potri.017G018000 [exp]	66.48	0.6761
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Potri.006G131400 [exp]	89.87	0.6949
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Potri.008G174500 [exp]	106.54	0.6602
AT2G19880			Nucleotide-diphospho-sugar tra...		Potri.018G087700 [exp]	154.94	0.6535
AT5G57670			Protein kinase superfamily pro...		Potri.018G096100 [exp]	161.07	0.6575

Compare expression of checked genes

Potri.007G099800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.