Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33480 340 / 3e-116 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003851 [exp] 305 / 8e-102 AT4G33480 293 / 2e-97 unknown protein Lus10002086 [exp] 301 / 5e-100 AT4G33480 285 / 1e-93 unknown protein Lus10020876 [exp] 292 / 3e-97 AT4G33480 308 / 6e-104 unknown protein Lus10033501 [exp] 284 / 3e-94 AT4G33480 308 / 5e-104 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12527 [poplar] [flax] DUF3727 Protein of unknown function (DUF3727)
Representative CDS sequence Show only first row Show all	>Potri.007G099900.2 pacid=42765487 polypeptide=Potri.007G099900.2.p locus=Potri.007G099900 ID=Potri.007G099900.2.v4.1 annot-version=v4.1 ATGGCCACCTTATCCATCTCCACAGCTCTTCAAAAACTCACTCCCTTCCCTTCTTCTTCTTCTTCTAGTAAGAAACAAAACTCATTTGTCTCGTTTCCAA TCTCAATCCAAAACCCTAACTCTATTAGACTCCCCATTTGCCATGCCACCGCCAAGTCCCAAACTGGACCCGTCAAGAAACGCTCCTCCTCCTCTTCTAC AGCTTCGCCTAATACTAACAAGAAGAAGAAAAGAAGAAGTAAAGGTGGCAGTGGTGATAATTTGAATTTGAGGGATGTCGAGATTGTTAAAGATGATGGC GGTCTTGCTGATGTCCAGGTTGATGATGATAGTGATGATGATAGTGATGATGGCTTTTATTCGGATTCGGTTTCAAGAAAAGTATCTACCCATCCAACTA TGCCTCTGCCTAAACCACCAGCTGGGTTTGTTGTGGATGATAGTGGAAGGGTTCTCTTGGCTTCTACTAAGCGGATTGTCACCATGGTTGATCCCACGAA TAATTATCCATTGGAGTGTGTTATAAGGAGAATATTTAGAAGTTCACGAGGGGATGAATGCATGCTGCTATGTCCAGCTGACACGCCTGTTCAGATATTG AAGAGTGTAAATATTGACGGTTGGTCTGCGGTCAGTGATGGAGAAGTTGAATCTATTCTTCCAGCTGCTGCATATGCTCTGGCCAAGATACACATGCATT TAGTGCATAGCGGACTCTGTTATACGGCAAGAGGAGGGTTTTGTTACTCAGAGGATGACATATTTGATTTCCGGACAGATGATGGTGAAGATATAGATGG CTTGCCAAATGAAGGTGTGGAAATTACATGCTTCCATCTGGATGGCGCACATTATATGATTTATACACCATCCGATCCACTTCTTTTTGTCGCTGTTAAG GATCAGGATGGGCAGTTGCAAATAGCTGATGATGATCTCTTAGAGGACCCAGCTATCATAAGTGCCATAGACGAGGAGACCGAATTCAATGCCCTCGTGG AAGAAGAAGCTGCTCTTCTGGAATCGCTGATGGGTGAAAGATGA
AA sequence Show only first row Show all	>Potri.007G099900.2 pacid=42765487 polypeptide=Potri.007G099900.2.p locus=Potri.007G099900 ID=Potri.007G099900.2.v4.1 annot-version=v4.1 MATLSISTALQKLTPFPSSSSSSKKQNSFVSFPISIQNPNSIRLPICHATAKSQTGPVKKRSSSSSTASPNTNKKKKRRSKGGSGDNLNLRDVEIVKDDG GLADVQVDDDSDDDSDDGFYSDSVSRKVSTHPTMPLPKPPAGFVVDDSGRVLLASTKRIVTMVDPTNNYPLECVIRRIFRSSRGDECMLLCPADTPVQIL KSVNIDGWSAVSDGEVESILPAAAYALAKIHMHLVHSGLCYTARGGFCYSEDDIFDFRTDDGEDIDGLPNEGVEITCFHLDGAHYMIYTPSDPLLFVAVK DQDGQLQIADDDLLEDPAIISAIDEETEFNALVEEEAALLESLMGER

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33480			unknown protein		Potri.007G099900 [exp]	0	1
AT1G80480		PTAC17	plastid transcriptionally acti...		Potri.001G201400 [exp]	2.44	0.9444
AT2G40690		SFD1, GLY1	SUPPRESSOR OF FATTY ACID DESAT...		Potri.013G090900 [exp]	8.12	0.9551
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Potri.010G022400 [exp]	9.05	0.9509
AT3G59040			Tetratricopeptide repeat (TPR)...		Potri.001G220300 [exp]	14.49	0.9494
AT1G70070		ISE2, EMB25, PD...	PIGMENT DEFECTIVE 317, INCREAS...		Potri.010G038500 [exp]	17.77	0.9476
AT1G74850		PDE343, PTAC2	PIGMENT DEFECTIVE 343, plastid...		Potri.015G069100 [exp]	18.30	0.9469
AT5G58070		ATTIL	temperature-induced lipocalin ...		Potri.018G110800 [exp]	20.32	0.9193
AT1G06730			pfkB-like carbohydrate kinase ...		Potri.005G220400 [exp]	21.35	0.9427
AT3G57180		BPG2	BRASSINAZOLE\(BRZ\) INSENSITIV...		Potri.006G044700 [exp]	22.13	0.9434
AT2G31170		FIONA, SYCOARAT...	cysteinyl t-RNA synthetase, FI...		Potri.018G024300 [exp]	26.45	0.9355

Compare expression of checked genes

Potri.007G099900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.