Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63840 1427 / 0 PSL5, RSW3 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) AT3G23640 325 / 3e-96 HGL1 heteroglycan glucosidase 1 (.1.2) AT5G11720 289 / 8e-84 Glycosyl hydrolases family 31 protein (.1) AT3G45940 286 / 5e-83 Glycosyl hydrolases family 31 protein (.1) AT1G68560 284 / 5e-82 AXY3, TRG1, XYL1, ATXYL1 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G069000 [exp] 1676 / 0 AT5G63840 1405 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) Potri.001G129600 [exp] 335 / 3e-99 AT3G23640 1463 / 0.0 heteroglycan glucosidase 1 (.1.2) Potri.011G154200 [exp] 317 / 5e-94 AT5G11720 1189 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.011G154500 [exp] 312 / 4e-92 AT5G11720 1215 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.001G442800 [exp] 309 / 3e-91 AT5G11720 1167 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.011G154300 [exp] 305 / 1e-89 AT5G11720 1194 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.010G125800 [exp] 281 / 9e-81 AT1G68560 1422 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Potri.008G120000 [exp] 274 / 3e-78 AT1G68560 1465 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Potri.006G039500 [exp] 90 / 4e-18 AT5G63840 74 / 3e-13 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033490 [exp] 1465 / 0 AT5G63840 1444 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) Lus10020887 [exp] 1441 / 0 AT5G63840 1435 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) Lus10038408 [exp] 309 / 5e-91 AT5G11720 1150 / 0.0 Glycosyl hydrolases family 31 protein (.1) Lus10008067 [exp] 296 / 2e-85 AT5G11720 1072 / 0.0 Glycosyl hydrolases family 31 protein (.1) Lus10034315 [exp] 289 / 2e-83 AT1G68560 1454 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10041457 [exp] 285 / 5e-82 AT1G68560 1455 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10035671 [exp] 269 / 3e-76 AT3G23640 1456 / 0.0 heteroglycan glucosidase 1 (.1.2) Lus10035020 [exp] 263 / 2e-74 AT1G68560 1238 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10035019 [exp] 258 / 1e-72 AT1G68560 1195 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10000779 [exp] 124 / 2e-30 AT5G11720 473 / 1e-160 Glycosyl hydrolases family 31 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF01055 [poplar] [flax] Glyco_hydro_31 Glycosyl hydrolases family 31 CL0103 [poplar] [flax] Gal_mutarotase PF13802 [poplar] [flax] Gal_mutarotas_2 Galactose mutarotase-like
Representative CDS sequence Show only first row Show all	>Potri.007G100000.1 pacid=42765188 polypeptide=Potri.007G100000.1.p locus=Potri.007G100000 ID=Potri.007G100000.1.v4.1 annot-version=v4.1 ATGAAACCCCTCGCTCCCCTCATCCTTTCCCTCCTCTTTCTCACCTCCCAAACAGTCCTTTCCTTCAAACGAGAAGAATTCCGCAACTGCCACCAAACTC CCTTCTGCAAACGCGCTCGTTCTCGCTCCCCCGGCGCGTGCACTCTAACCCCTCACAGCATCTCCATCTCCAACGGCGACCTAACCGCTAAACTACTCTC TAAAACTGATGAACAAATCCGACCCTTGATTCTCTCCCTCTCCGTCTACCAAGATGGAATCCTACGTCTCAAAATCGACGAAGATTACAACCACCCGGAC CCACCTGTTCCTAAACGACGGTTTCAGGTCCCTGATGTCGTCCTTCCAGAGTTCGAATCTAACAAGCTCTGGCTCCAACGACTCTCAACGGAAACTGTGG ACGGCGAATCCTCTCCATCAACGGTTGTTTACTTATCTGATGGGTACGACGCCGTTCTCCGTCACGATCCGTTTGAGATCTACATTCGTGATAAGAAGTC GGGTAATCAGAAATTAATTTCGCTAAACTCTCATCAGTTATTTGATTTCGAGCAATTGAGAGTGAAACAAGAAAAGCAAGATAGCGATAATAATGAGGAT AGTGGTAGTGATGATAATTGGGAGGAGAGATTTAGGTCTCATACTGATACGAGACCTTATGGGCCACAATCGATTAGCTTTGATGTTTCATTTTATAATG CTGAATTTGTTTCGGGGATTCCGGAACACGCAACGAGTTTGGCGTTGAAGCCGACTAGAGGGCCGGGAGTTGAGAAAGATTCGGAGCCATATAGGCTGTT TAATTTGGATGTGTTTGAGTATTTGAACGAGTCTCCGTTTGGATTGTATGGGTCGATTCCTTTGATGATTTCGCATGGTAAAGAAGGGAGGAGTGCGGGG TTCTTTTGGTTGAATGCTGCGGAAATGCAGATTGACGTGTTAGGAGATGGGTGGGATGCGGAGTCTGGGATCGAGTTGGTTAAGCAGAAGAGTATTGATA CGTTTTGGATGAGTGAGGCGGGGATTGTGGATGCGTTTTTCTTTGTTGGTCCGGAACCAAAAGATGTTGTGAAACAGTATACGAGTGTAACAGGGAGACC TTCGATGCCACAGTTGTTTTCCATTGCCTATCATCAATGTAGGTGGAATTATAGGGATGAAGAGGATGTGGAGAATGTGGATGCAAAATTTGATGAGCAT GATATTCCATATGATGTTTTGTGGCTTGATATTGAGCATACAGATGGTAAAAGGTATTTTACATGGGATCCGGTGTTGTTTCCAAACCCAGAGGAGATGC AAAAGAAGTTGGCAGCCAAAGGGAGGCATATGGTGACTATTGTGGATCCTCATATTAAGAGGGATGATTCCTTTAGGTTGCACAAGGAGGCTACTGAGAA AGGATATTATGTAAAGGATGCAAGTGGAAAGGATTTTGATGGGTGGTGCTGGCCTGGGTCATCTTCTTATTTGGATATGGTTAATCCAGAGATTAGGTCG TGGTGGGGTGATAAGTTCTCGTATGAAAATTATGTTGGTTCAACTCCTTCATTATATATTTGGAATGATATGAATGAGCCTTCTGTGTTCAATGGTCCAG AGGTCTCAATGCCAAGAGATGCTTTACACCATGAAGGCATTGAACACCGGGAGTTGCATAATGCCTATGGCTACTACTTCCACATGGCAACATCTAATGG TCTTCTAAAACGTGGGGGTGGGAATGACAGACCTTTTGTTTTGTCAAGAGCCTTCTTCCCAGGGAGTCAAAGATACGGATCTGTTTGGACAGGAGATAAC ACAGCAGATTGGGATCACCTGAGGGTTTCAGTTCCAATGATCTTGACACTTGGTCTCTCTGGAATTTCATTCTCTGGTGCGGATGTTGGTGGGTTCTTTG GCAACCCAGAGCCTGAGTTATTAGTTCGCTGGTATCAACTTGGTGCCTTCTATCCTTTCTTCAGGGCCCATGCCCATCAGGACACCAAAAGACGAGAACC TTGGTTATTTGGAGAGAAAAACACACGGCTAATAAGAGAGGCCATACGTGTTCGGTACATGTTGCTCCCTTATTTCTACACATTATTTAGAGAGGCAAAC ACTACTGGCCTTCCTGTCATGCGCCCCTTGTGGATGGAATTTCCTTCTGATGAAATTACTTTCAGCAATGATGAGGCTTTCATGGTTGGAAGCAGTCTCC TGGTGCAAGGAATCTACACTGAGCGAGCAAAATACACATCTGTTTACCTGCCTGGGAAAGAATTATGGTATGACATTAGAACTGGAGCTGCATACAAGGG AGGCAAAACCCACAAGCTGGAGGCCAAAGAGGAAAGTGTTCCTGCTTTTCAAAGGGCTGGAACTATTATACCCAGGAAAGACCGGCTTCGTCGAAGCTCC ACGCAGATGGTGAATGATCCTTATACACTGGTGATAGCTCTAAACAGTTCTCAAGCAGCTGAAGGCGAGCTCTACATCGATGATGGAAAAAGCTATGAAT TTTTGCAAGGGGCTTACATCCATCGCCGTTTTGTCTTTGCTAATGGAAAGCTTACATCCATAAATCTGGCCCCCTCCAGCAGTAGCAAATCCCAATTTTC ATCAAAGAGCATCCTCGAAAGGATTATACTGCTAGGTTACTCTCCTGGACCAAAGAATGCTCTCATTGAACCGGCAAATCAGGAGGTCGAAGTTGAACTC GGGCCCCTTATGCTTGAAGGGGGGCGTGGATCTTCTGTAGTAACCATCCGCAAACCAGCTGTCCAAGTTTCCGATGACTGGACAATAAAAATTTTGTAA
AA sequence Show only first row Show all	>Potri.007G100000.1 pacid=42765188 polypeptide=Potri.007G100000.1.p locus=Potri.007G100000 ID=Potri.007G100000.1.v4.1 annot-version=v4.1 MKPLAPLILSLLFLTSQTVLSFKREEFRNCHQTPFCKRARSRSPGACTLTPHSISISNGDLTAKLLSKTDEQIRPLILSLSVYQDGILRLKIDEDYNHPD PPVPKRRFQVPDVVLPEFESNKLWLQRLSTETVDGESSPSTVVYLSDGYDAVLRHDPFEIYIRDKKSGNQKLISLNSHQLFDFEQLRVKQEKQDSDNNED SGSDDNWEERFRSHTDTRPYGPQSISFDVSFYNAEFVSGIPEHATSLALKPTRGPGVEKDSEPYRLFNLDVFEYLNESPFGLYGSIPLMISHGKEGRSAG FFWLNAAEMQIDVLGDGWDAESGIELVKQKSIDTFWMSEAGIVDAFFFVGPEPKDVVKQYTSVTGRPSMPQLFSIAYHQCRWNYRDEEDVENVDAKFDEH DIPYDVLWLDIEHTDGKRYFTWDPVLFPNPEEMQKKLAAKGRHMVTIVDPHIKRDDSFRLHKEATEKGYYVKDASGKDFDGWCWPGSSSYLDMVNPEIRS WWGDKFSYENYVGSTPSLYIWNDMNEPSVFNGPEVSMPRDALHHEGIEHRELHNAYGYYFHMATSNGLLKRGGGNDRPFVLSRAFFPGSQRYGSVWTGDN TADWDHLRVSVPMILTLGLSGISFSGADVGGFFGNPEPELLVRWYQLGAFYPFFRAHAHQDTKRREPWLFGEKNTRLIREAIRVRYMLLPYFYTLFREAN TTGLPVMRPLWMEFPSDEITFSNDEAFMVGSSLLVQGIYTERAKYTSVYLPGKELWYDIRTGAAYKGGKTHKLEAKEESVPAFQRAGTIIPRKDRLRRSS TQMVNDPYTLVIALNSSQAAEGELYIDDGKSYEFLQGAYIHRRFVFANGKLTSINLAPSSSSKSQFSSKSILERIILLGYSPGPKNALIEPANQEVEVEL GPLMLEGGRGSSVVTIRKPAVQVSDDWTIKIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Potri.007G100000 [exp]	0	1
AT1G79940		ATERDJ2A	DnaJ / Sec63 Brl domains-conta...		Potri.004G072200 [exp]	1.73	0.8200
AT4G24330			Protein of unknown function (D...		Potri.004G223000 [exp]	2.23	0.8369
AT4G39920		TFCC, POR	TUBULIN-FOLDING COFACTOR C, PO...		Potri.005G074700 [exp]	5.47	0.7737	POR.1,TFCFC
AT3G18190			TCP-1/cpn60 chaperonin family ...		Potri.015G042600 [exp]	6.92	0.7955
AT5G61790		CNX1, ATCNX1	calnexin 1 (.1)		Potri.012G111100 [exp]	7.21	0.7976	CNX1.2
AT2G27260			Late embryogenesis abundant (L...		Potri.001G218300 [exp]	7.93	0.7921
AT3G07100		AtSEC24A, SEC24...	ENDOPLASMIC RETICULUM MORPHOLO...		Potri.008G049700 [exp]	8.48	0.7540
AT1G67930			Golgi transport complex protei...		Potri.002G058300 [exp]	10.00	0.8295
AT3G23660			Sec23/Sec24 protein transport ...		Potri.019G003100 [exp]	12.84	0.7970
AT5G20590		TBL5	TRICHOME BIREFRINGENCE-LIKE 5 ...		Potri.018G133000 [exp]	17.02	0.7362

Compare expression of checked genes

Potri.007G100000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.