Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63860 739 / 0 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) AT5G12350 205 / 9e-58 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G19420 205 / 1e-57 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT5G42140 201 / 2e-56 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G16040 184 / 9e-54 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G02510 180 / 4e-52 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) AT5G08710 181 / 6e-52 RUG1 RCC1/UVR8/GEF-like 1, Regulator of chromosome condensation (RCC1) family protein (.1) AT1G76950 185 / 9e-51 PRAF1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT4G14368 184 / 2e-50 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G23270 179 / 5e-49 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G276900 [exp] 197 / 4e-55 AT5G19420 1483 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.001G026900 [exp] 196 / 1e-54 AT5G19420 1281 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.005G190000 [exp] 196 / 2e-54 AT5G42140 1407 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.009G071800 [exp] 194 / 4e-54 AT5G19420 1610 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.008G167500 [exp] 194 / 4e-54 AT4G14368 1266 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.T124906 [exp] 194 / 5e-54 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.003G197600 [exp] 194 / 5e-54 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.002G070300 [exp] 190 / 2e-52 AT5G42140 1422 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.005G071000 [exp] 181 / 2e-52 AT5G08710 515 / 0.0 RCC1/UVR8/GEF-like 1, Regulator of chromosome condensation (RCC1) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039618 [exp] 725 / 0 AT5G63860 715 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10029536 [exp] 665 / 0 AT5G63860 642 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10036737 [exp] 201 / 2e-56 AT1G69710 974 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10037192 [exp] 199 / 1e-55 AT1G69710 986 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10035957 [exp] 190 / 1e-55 AT5G08710 504 / 1e-178 RCC1/UVR8/GEF-like 1, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10036030 [exp] 196 / 2e-54 AT5G19420 1644 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10009701 [exp] 193 / 2e-53 AT5G19420 1567 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10039525 [exp] 192 / 3e-53 AT5G19420 1245 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10024157 [exp] 191 / 1e-52 AT5G19420 1279 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10033543 [exp] 182 / 1e-52 AT3G02510 648 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00415 [poplar] [flax] RCC1 Regulator of chromosome condensation (RCC1) repeat
Representative CDS sequence Show only first row Show all	>Potri.007G100200.1 pacid=42766663 polypeptide=Potri.007G100200.1.p locus=Potri.007G100200 ID=Potri.007G100200.1.v4.1 annot-version=v4.1 ATGAAAAGCAAAATGGTCGAGGATGAAGGAGCTGCTAGTGGTAGTGAAGTTAGTGGTCCAATTCGTCAAGTTATTCTTATTTCTGCCGGTGCTAGTCACT CTGTTGCTCTTCTTTCTGGAAACATCGTTTGCTCCTGGGGACGAGGAGAGGATGGGCAGTTAGGCCATGGGGATGCTGAGGATAGACCCACTCCTACTCA ATTGAGTACATTGGATGGCCTTGATATAATATCAATTACTTGCGGTGCTGATCATACAACTTCATATTCTGAGTCACGAATGGAGGTCTATAGTTGGGGA TGGGGTGATTTTGGGAGGCTAGGACATGGAAATTCTAGTGATTTGTTCACTCCTCAGCCAATTAAGGCTTTGCACAGTTTAAAGATAAGGCAAATTGCTT GTGGGGATAGCCATTGTCTGGCAGTCACCATGGACGGTGAGGTGCAAAGTTGGGGGCGGAATCAAAATGGTCAACTTGGTCTTGGCACCACTGAGGACTC CCTTGTGCCTCAGAAAATTCAAGCTTTTCAGGGAGTCTCTATTAAAATGGTTGCTGCTGGTGCTGAACATACTGCAGCTGTCACAGAAGATGGAGAGCTC TATGGATGGGGTTGGGGCCGATATGGGAACTTGGGACTAGGTGACAGAAATGATCGCCTAGTTCCTGAAAAAGTTTCCCTTGTCAATGGAGACAAGATGA TAATGGTTGCATGTGGGTGGCGGCATACAATATCTGTTTCCTCTTCTGGTGGATTATACACTTATGGATGGAGCAAATATGGTCAACTGGGACATGGGGA CTTTGAGGATCACCTGACTCCTCACAAGGTGGAAGCCTTGCGGGATAGTTACATTTCTATGATATCAGGTGGCTGGAGACACACTATGGCATTGACTTCC GATGGAAACCTTTATGGCTGGGGATGGAATAAGTTTGGACAGGTTGGAGTTGGTGACAACATTGATCATTGCTCTCCTGTGCAAGTTAAATTTCCACATG AGCAGAAAGTAGTCCAGATCTCATGTGGATGGAGGCACACACTTGCTATTACTGAACGACAAAATGTATTTTCTTGGGGAAGAGGCACAAATGGACAACT TGGTCATGGAGAGTCTATGGACCGAAATCTACCGAAAATCATAGAAGTTCTGAGTGCTGATGGATCTGGTGGCCATCAGATTGAAGCTTCAACTGTTGAT CCGTCATTAGGGAAAAGCTGGGTTTCACCATCTGATAGATACGCTATTGTTCCTGATGAATCTGGGCAAGCAGTTTCAGTTGGGGGAAATGGGAATGATG CAAGTGTCCCAGAGAGTGATGTCAAACGGATAAGGATTTGA
AA sequence Show only first row Show all	>Potri.007G100200.1 pacid=42766663 polypeptide=Potri.007G100200.1.p locus=Potri.007G100200 ID=Potri.007G100200.1.v4.1 annot-version=v4.1 MKSKMVEDEGAASGSEVSGPIRQVILISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRPTPTQLSTLDGLDIISITCGADHTTSYSESRMEVYSWG WGDFGRLGHGNSSDLFTPQPIKALHSLKIRQIACGDSHCLAVTMDGEVQSWGRNQNGQLGLGTTEDSLVPQKIQAFQGVSIKMVAAGAEHTAAVTEDGEL YGWGWGRYGNLGLGDRNDRLVPEKVSLVNGDKMIMVACGWRHTISVSSSGGLYTYGWSKYGQLGHGDFEDHLTPHKVEALRDSYISMISGGWRHTMALTS DGNLYGWGWNKFGQVGVGDNIDHCSPVQVKFPHEQKVVQISCGWRHTLAITERQNVFSWGRGTNGQLGHGESMDRNLPKIIEVLSADGSGGHQIEASTVD PSLGKSWVSPSDRYAIVPDESGQAVSVGGNGNDASVPESDVKRIRI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63860		UVR8	UVB-RESISTANCE 8, Regulator of...		Potri.007G100200 [exp]	0	1
AT5G62790		PDE129, DXR	PIGMENT-DEFECTIVE EMBRYO 129, ...		Potri.012G080900 [exp]	4.89	0.9262	DXR.1
AT1G09420		G6PD4	glucose-6-phosphate dehydrogen...		Potri.013G005200 [exp]	9.79	0.8630
AT5G67385			Phototropic-responsive NPH3 fa...		Potri.007G053200 [exp]	14.07	0.8811
AT3G53130		CYP97C1, LUT1	LUTEIN DEFICIENT 1, CYTOCHROME...		Potri.006G119800 [exp]	23.19	0.9198	CYP97C4
AT3G21300			RNA methyltransferase family p...		Potri.001G195300 [exp]	24.97	0.8739
AT1G31190		IMPL1	myo-inositol monophosphatase l...		Potri.012G120492 [exp]	25.03	0.9141
AT2G31400		GUN1	genomes uncoupled 1 (.1)		Potri.002G193900 [exp]	28.35	0.8700
AT4G37270		ATHMA1, HMA1	ARABIDOPSIS THALIANA HEAVY MET...		Potri.007G049000 [exp]	30.98	0.8910
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Potri.002G255600 [exp]	32.24	0.8577
AT4G36390			Methylthiotransferase (.1)		Potri.007G018500 [exp]	34.46	0.9139

Compare expression of checked genes

Potri.007G100200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.