Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52430 320 / 8e-102 PAD4, ATPAD4 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) AT3G48090 154 / 2e-39 ATEDS1, EDS1 enhanced disease susceptibility 1, alpha/beta-Hydrolases superfamily protein (.1.2) AT3G48080 151 / 1e-38 alpha/beta-Hydrolases superfamily protein (.1) AT5G14930 124 / 1e-29 GENE101, SAG101 senescence-associated gene 101 (.1.2.3) AT3G07400 43 / 0.0007 lipase class 3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G068700 [exp] 1027 / 0 AT3G52430 327 / 2e-104 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) Potri.012G074700 [exp] 187 / 1e-51 AT3G48080 426 / 7e-142 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G069600 [exp] 183 / 6e-50 AT3G48090 424 / 2e-141 enhanced disease susceptibility 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.019G005256 [exp] 168 / 1e-44 AT5G14930 317 / 3e-101 senescence-associated gene 101 (.1.2.3) Potri.019G007227 [exp] 158 / 3e-41 AT5G14930 300 / 3e-94 senescence-associated gene 101 (.1.2.3) Potri.009G086100 [exp] 152 / 4e-39 AT5G14930 309 / 4e-98 senescence-associated gene 101 (.1.2.3) Potri.001G290600 [exp] 149 / 5e-38 AT5G14930 328 / 2e-105 senescence-associated gene 101 (.1.2.3) Potri.002G249400 [exp] 47 / 5e-05 AT3G07400 1235 / 0.0 lipase class 3 family protein (.1) Potri.001G291033 [exp] 42 / 0.0004 AT5G14930 84 / 4e-19 senescence-associated gene 101 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039617 [exp] 664 / 0 AT3G52430 375 / 1e-122 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) Lus10029534 [exp] 635 / 0 AT3G52430 349 / 2e-112 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) Lus10042937 [exp] 185 / 1e-50 AT3G48090 416 / 2e-138 enhanced disease susceptibility 1, alpha/beta-Hydrolases superfamily protein (.1.2) Lus10039444 [exp] 169 / 7e-44 AT3G01380 1238 / 0.0 transferases;sulfuric ester hydrolases;catalytics;transferases (.1) Lus10011697 [exp] 154 / 4e-40 AT5G14930 255 / 4e-78 senescence-associated gene 101 (.1.2.3) Lus10009502 [exp] 154 / 1e-39 AT5G14930 299 / 5e-94 senescence-associated gene 101 (.1.2.3) Lus10036644 [exp] 125 / 7e-31 AT3G48090 275 / 2e-87 enhanced disease susceptibility 1, alpha/beta-Hydrolases superfamily protein (.1.2) Lus10039472 [exp] 124 / 3e-30 AT5G14930 223 / 1e-66 senescence-associated gene 101 (.1.2.3) Lus10014518 [exp] 119 / 5e-28 AT5G14930 298 / 2e-93 senescence-associated gene 101 (.1.2.3) Lus10032169 [exp] 105 / 1e-23 AT5G14930 314 / 7e-100 senescence-associated gene 101 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF01764 [poplar] [flax] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Potri.007G100600.1 pacid=42766597 polypeptide=Potri.007G100600.1.p locus=Potri.007G100600 ID=Potri.007G100600.1.v4.1 annot-version=v4.1 ATGGATACAGAAACTTCGCCGTTTGAGACTAGTGAGATGCTGGCCGATTTCTTGGCTTCCACACCATTGCTATCCGAGTCATGGAGGTTATGCAATCTCG CCACAGCAAACTCACCACAGAGTTTCGTAGTTGATCAGGTCGGAAGTATTGGGTATGTGGCCTTTTCCGGCACCCTATTTGTATCAGGCTCAGACCCCAG TTTCAAGAATTTGGTTCGTTTGCCAGTACATGATGTTGCTGGCAATGACCTTTTTGTTCCTTTACATGACCAAAATGAAGGGGAAGAGCCTGTCATGGTG CAAGGTGCCTTGCTGAGGATTTTCGAGAATATATACAGCGACCCAAGTTTTCAAAACCAGATGTCTACGCTAATGCAGACAAGTCAGTCAATTATCTTCA CAGGCCATTCCATTGGTGGAACAGCTGCCTCTCTTGCTGCTCTTTGGCTCCTTTCTTACCTTCAATCCAATTCTCCAAACCTCTCAGTTCTGTGCATCAC CTTTGGCTCTCCATTGCTAGGCAACGAGACCCTTTCTCGTGCCATTCTTCGCGAAAGATGGGGTGGCAAATTTTGCCATGTTGTATCAAAGTATGACTTG ATGCCACGGATACTCTTTGCTCCACTAGATCCCATAGCTCCCCTCATAAAACCCCTATTACAGTTTTGGCACTTGTATATGACTTCTCCACATCTTGGAT TGCTTGCTGTCCAACGAAATGATGAATACGAGGCTGAGATTTTCCAGTTTGTGTTAGTTCATTTGGGAAGGTTAGTAGAAGCTGGGGAAGAGGCAGTGAC AGGAGTGTTTAGGCCATTTGGGAACTATTTTTTCTGTTCTGAAGACGGAGCAATTTGTGTGGACAACGTGGAATCTGTTATTAAAATGATGTATTTGTTG CTCGCAACGGGGTCGCCTAGCTATAGCATTGAGGATCATCTCAAGTATGGTGATTATGTAGAGAGAATTTCCTCACAATTTTTGGAGAGGAAAAGTTCCA TGGAAGGAGAGCTTCCTGAATCAAGCTATGAAGCAGGAGTTGTGCTGGCATTGCAGTCATCGGGAATTGCCAGTCAGGAACCAGTCGCAGGGCGAGCCAA AGATTGCCTAAAGGCAGCAAGGCGAATGGGTCGTACACCAAACCTAAACTGTGCCAATCTGGCAATTAAGTTGTCCAGAATCAATCCTTACAGGGCAGAA ATAGAGTGGTATAAAGCGTTGTGCGACCGGTCTGATGATCAGATGGGTTACTATGACTCCTTTAAACGAAGGGGAGCCTCGAAAAGGGACTTTAAAGTCA ACTTGAACCGGCACAAGCTAGCTCAGTTTTGGGACAACGTAATCGACTTGATGGAAAGCAATCAACTCCCTCATGATTTTCACAGACATGGAAAATGGGT CTATTCTTCACAGTCCTATAAGCTCCTTGTCGAGCCTCTGGATATTGCTGAGTATTATCGAACAGGCATGCATCACAGTAAGGGGCATTACATTAACCAT GGAAGAGAGAGGAGGTACCAGATATTCGATAGGTGGTGGAAAAATGTTAGAGTTGAAGAGAATAAACGGAGCAAGTTTGCTAGTTTGACTCAGGACACAT GTTTTTGGGCAAAAGTGGAGGAAGCTAGGGGGTTGTTAGATGATGTTGGGAATACTAGGGATCCTAGTCATTCGGCTTTTCTTTGGAAGAATATGGATGG TTTTGCAAACTATGCAAAAGCGTTGGTTGAAGCTAAGGAGGTGTCTATAGATGTGGTGGCAAAGAATTCGAGCTATTCTTTGTGGCTGAAAGATTATAAT GAACTGAAATCGCAAAGGGAGCAATTCCGTCCCCAGTTTTCCGGTTTTATGAACAGGGAAATAGTTCCATAG
AA sequence Show only first row Show all	>Potri.007G100600.1 pacid=42766597 polypeptide=Potri.007G100600.1.p locus=Potri.007G100600 ID=Potri.007G100600.1.v4.1 annot-version=v4.1 MDTETSPFETSEMLADFLASTPLLSESWRLCNLATANSPQSFVVDQVGSIGYVAFSGTLFVSGSDPSFKNLVRLPVHDVAGNDLFVPLHDQNEGEEPVMV QGALLRIFENIYSDPSFQNQMSTLMQTSQSIIFTGHSIGGTAASLAALWLLSYLQSNSPNLSVLCITFGSPLLGNETLSRAILRERWGGKFCHVVSKYDL MPRILFAPLDPIAPLIKPLLQFWHLYMTSPHLGLLAVQRNDEYEAEIFQFVLVHLGRLVEAGEEAVTGVFRPFGNYFFCSEDGAICVDNVESVIKMMYLL LATGSPSYSIEDHLKYGDYVERISSQFLERKSSMEGELPESSYEAGVVLALQSSGIASQEPVAGRAKDCLKAARRMGRTPNLNCANLAIKLSRINPYRAE IEWYKALCDRSDDQMGYYDSFKRRGASKRDFKVNLNRHKLAQFWDNVIDLMESNQLPHDFHRHGKWVYSSQSYKLLVEPLDIAEYYRTGMHHSKGHYINH GRERRYQIFDRWWKNVRVEENKRSKFASLTQDTCFWAKVEEARGLLDDVGNTRDPSHSAFLWKNMDGFANYAKALVEAKEVSIDVVAKNSSYSLWLKDYN ELKSQREQFRPQFSGFMNREIVP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G52430		PAD4, ATPAD4	ARABIDOPSIS PHYTOALEXIN DEFICI...		Potri.007G100600 [exp]	0	1
AT1G05805	bHLH	bHLH128	basic helix-loop-helix (bHLH) ...		Potri.002G231700 [exp]	1.41	0.9197
AT3G25070		RIN4	RPM1 interacting protein 4 (.1...		Potri.002G245400 [exp]	2.82	0.9056	RIN4.1
					Potri.002G159800 [exp]	2.82	0.8893
AT5G57630		CIPK21, SnRK3.4	SNF1-RELATED PROTEIN KINASE 3....		Potri.006G171400 [exp]	5.47	0.8954
AT3G26590			MATE efflux family protein (.1...		Potri.019G063500 [exp]	6.70	0.9001
AT3G14470			NB-ARC domain-containing disea...		Potri.018G017900 [exp]	7.21	0.8970	Pt-RGA.54
AT5G54110		ATMAMI	membrane-associated mannitol-i...		Potri.001G408200 [exp]	7.48	0.8932
AT1G17130			Family of unknown function (DU...		Potri.011G096100 [exp]	9.00	0.8885
AT1G36310			S-adenosyl-L-methionine-depend...		Potri.002G091300 [exp]	10.48	0.8869
AT2G38610			RNA-binding KH domain-containi...		Potri.013G159800 [exp]	10.72	0.8702

Compare expression of checked genes

Potri.007G100600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.