Plant FIBer expression Database

Potri.007G101201 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G21610 284 / 8e-86 wound-responsive family protein (.1.2.3)
AT1G77310 198 / 4e-54 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G067800
[exp]
912 / 0 AT1G77310 321 / 5e-99 unknown protein
Potri.002G078800
[exp]
381 / 1e-121 AT1G77310 417 / 4e-135 unknown protein
Potri.005G182300
[exp]
366 / 4e-116 AT1G21610 449 / 3e-148 wound-responsive family protein (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028676
[exp]
311 / 1e-95 AT1G21610 486 / 3e-163 wound-responsive family protein (.1.2.3)
Lus10000853
[exp]
306 / 2e-93 AT1G21610 459 / 3e-152 wound-responsive family protein (.1.2.3)
Lus10028666
[exp]
142 / 2e-35 AT1G77310 261 / 3e-78 unknown protein
PFAM info
Representative CDS sequence
>Potri.007G101201.1 pacid=42765148 polypeptide=Potri.007G101201.1.p locus=Potri.007G101201 ID=Potri.007G101201.1.v4.1 annot-version=v4.1
ATGGAGGTTGGTAATACCAAACAGGGTGATACTGGTAGTCCTCCTAGGCAAAGGTTCTGCATTGAACTCAATCCTGGAGAGACAACAATAGTGTCATGGA
AGAAGCTTTTGAAAGATGCAGCAGCAAACAAGGCAAGCTCGTCTCAGTCTCAGAATCAAACTACTACTGCTATTGATGCTGTTGTGGAGCCTGCTTCTGT
GGATACTGACCGGCAAGAGGCTCAGTTTTCTCTGGGCCAGCCCACTGAATCTGTATCAAAAAATGCACCTTCTTCAAATCATCTTGGTTCTGTTATTGAG
AAAATAGAGGGGCTCTACGTGGATGAGTATTTTGAAATTGATGGGTCAACTACCGAACATGATGGATTCTTTGTGAATAAGGGAAAATTAGAACACATGA
ACAAACCGATCTCATCCACTCACTGCCAGCCAAAGAAAAGAAGGAATAATATACAAAAAGCTAAAGAAGAGAAGGATGATGATCATGTAAGAAATAAACA
TGCAAAATTAGGTCATGCAAGTATGGATATTGCTACAAGGAATAAACCTCTGGTTGAACCATTTCCAACCAACTCTCAGAGTTTAGCTGCTGATGGTGAA
CATCATCATGATGGGAAACTGCATTCATTGACTTATCCCGTAGGATCTTCTGACAAAAAGCCTGCTGCTCTTGATATAAGATCTGAAAATTCATCTTATT
CAGGAATAACAAACAGGGATGAGTACATCTCCTGCACAAGACTGAATAACACTGAAAAACAGATGAATGGAGTCCTCCAGCCTGTGAATTTGGGTAGAAG
TGTGAAAGATACAGGTGAATTATCTGTAGTTGCATATGAAAAGAATCAAGAAAACTATGCTCCCAGCCAACTTGGGCTGCAATCGAAAAGATTAGCTAGT
AAAACCAGCAATACATCCTCTTCCAAATTTTCTCAAAGAAACAAGAAAGGAAGACATGAACTGCCTGACCTGAATCTTCCTCAGTATCCAGTGCAAGCTG
AAAAGAAAACTGCCATCATACTTCCAAAGGATGTTTCTAGCTTGCAGCTTAAGGGTAGTACGCTTGAAAGGGCCATCAGGGATTTAGAGAAAGTGGTTGC
AGAATCTAGACCGCGGAATATTGAAGTTCAGGATACTGATGCCTCATCCACAGCTATCAAAAGAAGATTGCCTTCTGAAGTGAAGCAGAAGCTTGCTAAA
GTTGCCAAGCTAGCGCAGTCAAGCCAAGGAAAAATATCAGAGGAATTAATCAATCGCCTTATGAGTATTCTTGGGCATTTAATTCAGCTCAGGACACTGA
AGAAAAATCTGAGAGAAATGGTTGAAATGGAACCAACAGCAAAGCAAGAGAAAGCTGACAGATTCCAGCTTATTAGAAGGGAGGTCATGGAGATGATAGA
ACTGCAGCAGGCATCTAAAAGAGAGAAAGCAGGTGGTGACTTTCAGAAAGCAATTATTGATGAAGAAAAAGGAGCTATGGATGAGAAGGATGTTATGGAC
AATAAGATGGAAGATAAGATATGTGATCTTTATGAGCTATTTGTTCAGGGGATGGATGAAGACAAAGGTCCACATATCAGAAAGTTGTATGTTGAGCTTG
CGGAACTGTGGCCTGATGGATCTATGGACAACCATGGGATAAAAAATGCTATTTATAGGGCAAAGGAGCGTAGAAAAACATTCTACAATAATGAGAAGGT
CCAAGAAAAAGCAAGGTTGGAAGAGGTGTCCAAATGCTGGAAGGATATTAATGTTGGTGGGAAAGCAACTTCAGTTGCTCAAGCAAAACGTGCACAAGAA
GGACACAGCACCCCAGCAGCCATCACTCAGTACCTCTCTGGACCTGCAAAACCTCTTCCTCCATTCCTAAAAGGCCGTAATGATGATTCTCCTAAACAAG
AGAAGCTTGAGAAAATGACATTTCCTATGTTGAAAGAACAAATGAAGCAGCAAAGGAGGGAGTTTAATCGTGGATTAAAAAAATCTTCTCCAAAAGTGGA
CAAGGAATCTCACATGTCCCACAAGCAGGAGGTTGAGCAGCAAGATGGCTTGAAACACCATCTGACCACCTCTTCTTCAAGCTTGGGACAGCAGAACTGA
AA sequence
>Potri.007G101201.1 pacid=42765148 polypeptide=Potri.007G101201.1.p locus=Potri.007G101201 ID=Potri.007G101201.1.v4.1 annot-version=v4.1
MEVGNTKQGDTGSPPRQRFCIELNPGETTIVSWKKLLKDAAANKASSSQSQNQTTTAIDAVVEPASVDTDRQEAQFSLGQPTESVSKNAPSSNHLGSVIE
KIEGLYVDEYFEIDGSTTEHDGFFVNKGKLEHMNKPISSTHCQPKKRRNNIQKAKEEKDDDHVRNKHAKLGHASMDIATRNKPLVEPFPTNSQSLAADGE
HHHDGKLHSLTYPVGSSDKKPAALDIRSENSSYSGITNRDEYISCTRLNNTEKQMNGVLQPVNLGRSVKDTGELSVVAYEKNQENYAPSQLGLQSKRLAS
KTSNTSSSKFSQRNKKGRHELPDLNLPQYPVQAEKKTAIILPKDVSSLQLKGSTLERAIRDLEKVVAESRPRNIEVQDTDASSTAIKRRLPSEVKQKLAK
VAKLAQSSQGKISEELINRLMSILGHLIQLRTLKKNLREMVEMEPTAKQEKADRFQLIRREVMEMIELQQASKREKAGGDFQKAIIDEEKGAMDEKDVMD
NKMEDKICDLYELFVQGMDEDKGPHIRKLYVELAELWPDGSMDNHGIKNAIYRAKERRKTFYNNEKVQEKARLEEVSKCWKDINVGGKATSVAQAKRAQE
GHSTPAAITQYLSGPAKPLPPFLKGRNDDSPKQEKLEKMTFPMLKEQMKQQRREFNRGLKKSSPKVDKESHMSHKQEVEQQDGLKHHLTTSSSSLGQQN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G21610 wound-responsive family protei... Potri.007G101201
[exp]
0 1
AT2G43465 RNA-binding ASCH domain protei... Potri.007G132100
[exp]
4.58 0.7616
AT5G44800 PKR1, CHR4, MI-... PICKLE RELATED 1, chromatin re... Potri.010G172100
[exp]
5.65 0.7728
AT5G13020 AtEML3, ACK1 EMSY-like 3, Emsy N Terminus (... Potri.003G212300
[exp]
9.48 0.7344
AT5G16610 unknown protein Potri.017G130400
[exp]
9.53 0.7406
AT5G15270 RNA-binding KH domain-containi... Potri.004G100201
[exp]
10.90 0.7548
AT5G25270 Ubiquitin-like superfamily pro... Potri.018G115500
[exp]
13.26 0.7528
AT3G23900 RNA recognition motif (RRM)-co... Potri.001G319000
[exp]
14.49 0.7584
AT2G28290 CHR3, SYD SPLAYED, CHROMATIN REMODELING ... Potri.010G019150
[exp]
16.85 0.7609
Potri.001G293001
[exp]
17.74 0.6975
AT1G60490 PI3K, ATVPS34 PHOSPATIDYLINOSITOL 3-KINASE, ... Potri.012G075100
[exp]
18.08 0.6602 Pt-PI3.1

Potri.007G101201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.