Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ATHDH.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09260 256 / 8e-87 VPS20.2 vacuolar protein sorting-associated protein 20.2 (.1) AT5G63880 253 / 9e-86 VPS20.1 SNF7 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G067700 [exp] 315 / 3e-110 AT5G09260 248 / 7e-84 vacuolar protein sorting-associated protein 20.2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037699 [exp] 271 / 7e-93 AT5G09260 340 / 3e-120 vacuolar protein sorting-associated protein 20.2 (.1) Lus10015693 [exp] 267 / 3e-91 AT5G09260 333 / 2e-117 vacuolar protein sorting-associated protein 20.2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0235 [poplar] [flax] PspA PF03357 [poplar] [flax] Snf7 Snf7
Representative CDS sequence Show only first row Show all	>Potri.007G101500.2 pacid=42765416 polypeptide=Potri.007G101500.2.p locus=Potri.007G101500 ID=Potri.007G101500.2.v4.1 annot-version=v4.1 ATGGGAAATTTATTTGTGAAGAAACCGAAGATAACAGATGTTGATCGAGCCATTCTCTCTCTCAAGACTCAAAGACGCAAGCTTGCCCAATATCAACAAC AGCTTGAAACTGTGATTGAAGCGGAAAAGCTAGCTGCTAAAGATTTGATTCGTGAGAAGAGAAAGGACAGGGCATTGTTAGCGTTGAAGAAGAAGAAAAC ACAAGAAGAATTGCTGAAGCAAGTGGATACGTGGCTCATTAATGTCGAACAACAATTGGCAGATATTGAGCTGGCCAGCAAGCAGAAAGCTGTATTTGAG AGTTTGAAGTCAGGTACTGATGCAATCAAGGCGATACAAAGTGAGGTCAATCTGGATGATGTTCAGAAGCTAATGGATGATACCGCTGAAGCTAAAGCTT ACCAAGATGAAATTAATGCTATCCTGGGGGAAAAACTATCAGCAGAAGATGAAGAGGAGATTTTAGCTGAATTTGAGGACTTGGAAACTCAGGTGGCTGT TCAAGACTTGCCAGAAGTGCCCACTATAGTTGTGTCTGAGGAACAGGAGCAGAAGTTGGACCTTCCTGATGTACCAACCAAACCACCTGTGCTGGTGGAT GATGCTGAAATTTCTTCAGCTGAGGTCCCCACTAAGAGAAAAGTTTTGGAGGAACCATTGCCAGCATGA
AA sequence Show only first row Show all	>Potri.007G101500.2 pacid=42765416 polypeptide=Potri.007G101500.2.p locus=Potri.007G101500 ID=Potri.007G101500.2.v4.1 annot-version=v4.1 MGNLFVKKPKITDVDRAILSLKTQRRKLAQYQQQLETVIEAEKLAAKDLIREKRKDRALLALKKKKTQEELLKQVDTWLINVEQQLADIELASKQKAVFE SLKSGTDAIKAIQSEVNLDDVQKLMDDTAEAKAYQDEINAILGEKLSAEDEEEILAEFEDLETQVAVQDLPEVPTIVVSEEQEQKLDLPDVPTKPPVLVD DAEISSAEVPTKRKVLEEPLPA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G09260		VPS20.2	vacuolar protein sorting-assoc...		Potri.007G101500 [exp]	0	1	Pt-ATHDH.3
AT5G18940			Mo25 family protein (.1.2)		Potri.010G028700 [exp]	4.79	0.8638
AT1G70330		"ENT1,AT", ENT1...	equilibrative nucleotide trans...		Potri.012G058900 [exp]	6.40	0.8145
AT1G65930		cICDH	cytosolic NADP+-dependent isoc...		Potri.008G080500 [exp]	13.00	0.7628	IDH1.3
AT3G46200		ATNUDT9	nudix hydrolase homolog 9 (.1)		Potri.009G026700 [exp]	14.03	0.7556
AT2G17530			Protein kinase superfamily pro...		Potri.005G102100 [exp]	16.88	0.8614
AT2G41610			unknown protein		Potri.014G108300 [exp]	17.26	0.8634
AT1G71070			Core-2/I-branching beta-1,6-N-...		Potri.008G006500 [exp]	22.00	0.8608
AT4G27435			Protein of unknown function (D...		Potri.011G122700 [exp]	31.14	0.8542
AT1G24030			Protein kinase superfamily pro...		Potri.010G095900 [exp]	31.74	0.8490
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Potri.004G059600 [exp]	36.27	0.8395	CESA.2

Compare expression of checked genes

Potri.007G101500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.