Plant FIBer expression Database

Potri.007G101600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G63910 568 / 0 FCLY farnesylcysteine lyase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G101700
[exp]
853 / 0 AT5G63910 521 / 0.0 farnesylcysteine lyase (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031378
[exp]
588 / 0 AT5G63910 612 / 0.0 farnesylcysteine lyase (.1)
Lus10010948
[exp]
583 / 0 AT5G63910 616 / 0.0 farnesylcysteine lyase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF13450 NAD_binding_8 NAD(P)-binding Rossmann-like domain
Representative CDS sequence
>Potri.007G101600.1 pacid=42765122 polypeptide=Potri.007G101600.1.p locus=Potri.007G101600 ID=Potri.007G101600.1.v4.1 annot-version=v4.1
ATGGTTATGTTGCCACTAAAAATTATCTTCTTACTCGCGATCTTCGGCGGCCTCACATTCCCACACACCTCCTCCTCCGCCACCACGTCAGCCGGAGGCG
ACGATGCTACCGTATGCATCATCGGCAGCGGAATTGGCGGCTCTTCAGTCGCCCACTTCCTCCGCCAATACACCACGAGCCACCATCCGAAAATCCTAAT
CTTCGAAAGACACGCCATCGTCGGCGGCCGGATGGCCACCGTTACAATCGGCGGCGACGCCTTCGAGGCCGGAGCTTCAATTCTCCACCCCAAAAACTAC
CACGCCTCGAACTATACTAATTTGCTAAATTTGACGGGGAAGAGACCATCCAGTTCAGACAGTTCAATTTCATTGGGGATTTGGGATGGCAATGGGTTTG
TTGTTAAAACCCTAAATGTGAATTCAAATTGGGGGATTGTAAACAAGATTGTGTCTTTTTTTAATGGGATTTATTTGTTTATGAGATATGGGTTTTCACT
TGTAAAAATGGAAGGGTTTGTTGATGAGACAGTGAATAAGTTTTTGAAGTATTATGAAGGAGTGGAAACAAGGCCTGTCTTTGAGAGTGTTGAGGAGATG
TTGAAGTGGGCTGGTTTGTTTAATCTTACTGGAAAGAGTTTGAAGGAGGAGCTGGTTGATGGTGTTAAATTGGCTCCTTTGTTGATTAAAGAATTGGTCA
CTGTCATTACACGAATTAATTATGGTCAAAGTGTCAACATCAGTGGACTTGCCGGAGCGGTTTCCTTGGCAGGATCTGGTGGTGGTTTATGGGCTGTTGA
AGGAGGGAACTGGCAGATGGCTGCTGGACTAATTAATAGTTCAGATGTTGAACTGTATCTCCATGAAGAAATTGATTCCATCTCTTATCTTGGAGAATAT
TATGAGCTCAACTCCACGAAAGGAAATTCTTATTCATGTGAAGTTGCAGTGGTTGCTACACCACTAGATGAATCGAGTATTCAATTTTCACCTCCAGTTT
CAGTTCCTGTGAGGCAATTACAGCACACACATGCAACTTTTGTGAGGGGCCTCGTAAATCCTGTATATTTTGGCCTGAAAGCTGTTTCAGAAATTCCAGA
ACTGGTGGCCACAATAGAGGACCCTCGTCTTCCTTTCACAAGCATTTCAATTCTCAAGTGTTATAATGAGACAGATATGACATACAAAATATTCTCTCGT
CAAGCAATGACTGATGCATTACTGGATAGCATCTTTAGTGTGAGGAAGGAGACCGTTCGAATAAACTGGGGCGCTTACCCTCATTACAAGGCTCCTGAAA
GATTCGCACCCTTTATTTTGGATGGTAAGCATTTGTACTATGTGAACGCTTTTGAGAATGCAGCCAGCACCATGGAGACTAGTGCTGTTGCAGCTGAAAA
TATAGCTCGACTCATCCTGTCAAGATTTTTTGGCAAGGATTCCTCTTGTCCGTCAGATTTAAAGAGAACCTCCTGTTCAAGTGCAGAGGCGTTGCATTCA
GATATGTGA
AA sequence
>Potri.007G101600.1 pacid=42765122 polypeptide=Potri.007G101600.1.p locus=Potri.007G101600 ID=Potri.007G101600.1.v4.1 annot-version=v4.1
MVMLPLKIIFLLAIFGGLTFPHTSSSATTSAGGDDATVCIIGSGIGGSSVAHFLRQYTTSHHPKILIFERHAIVGGRMATVTIGGDAFEAGASILHPKNY
HASNYTNLLNLTGKRPSSSDSSISLGIWDGNGFVVKTLNVNSNWGIVNKIVSFFNGIYLFMRYGFSLVKMEGFVDETVNKFLKYYEGVETRPVFESVEEM
LKWAGLFNLTGKSLKEELVDGVKLAPLLIKELVTVITRINYGQSVNISGLAGAVSLAGSGGGLWAVEGGNWQMAAGLINSSDVELYLHEEIDSISYLGEY
YELNSTKGNSYSCEVAVVATPLDESSIQFSPPVSVPVRQLQHTHATFVRGLVNPVYFGLKAVSEIPELVATIEDPRLPFTSISILKCYNETDMTYKIFSR
QAMTDALLDSIFSVRKETVRINWGAYPHYKAPERFAPFILDGKHLYYVNAFENAASTMETSAVAAENIARLILSRFFGKDSSCPSDLKRTSCSSAEALHS
DM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G63910 FCLY farnesylcysteine lyase (.1) Potri.007G101600
[exp]
0 1
AT3G14110 FLU FLUORESCENT IN BLUE LIGHT, Tet... Potri.001G166000
[exp]
2.44 0.7894
AT3G51620 PAP/OAS1 substrate-binding dom... Potri.013G154900
[exp]
5.47 0.7180
AT3G08780 unknown protein Potri.016G126200
[exp]
5.65 0.7150
AT2G44520 COX10 cytochrome c oxidase 10 (.1) Potri.002G216100
[exp]
9.16 0.7228
AT3G11320 Nucleotide-sugar transporter f... Potri.001G247600
[exp]
12.64 0.7806
AT3G27330 zinc finger (C3HC4-type RING f... Potri.001G336766
[exp]
17.05 0.7775
AT1G31940 unknown protein Potri.001G135000
[exp]
19.33 0.7334
AT5G56340 ATCRT1 RING/U-box superfamily protein... Potri.019G032500
[exp]
20.19 0.7768
AT5G38970 ATBR6OX, CYP85A... brassinosteroid-6-oxidase 1 (.... Potri.004G117700
[exp]
22.31 0.7656
AT5G25110 CIPK25, SnRK3.2... SNF1-RELATED PROTEIN KINASE 3.... Potri.006G263500
[exp]
23.36 0.7271 CIPK25.1

Potri.007G101600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.