Plant FIBer expression Database

Potri.007G101700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G63910 521 / 0 FCLY farnesylcysteine lyase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G101600
[exp]
811 / 0 AT5G63910 568 / 0.0 farnesylcysteine lyase (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010948
[exp]
543 / 0 AT5G63910 616 / 0.0 farnesylcysteine lyase (.1)
Lus10031378
[exp]
541 / 0 AT5G63910 612 / 0.0 farnesylcysteine lyase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF13450 NAD_binding_8 NAD(P)-binding Rossmann-like domain
Representative CDS sequence
>Potri.007G101700.1 pacid=42764908 polypeptide=Potri.007G101700.1.p locus=Potri.007G101700 ID=Potri.007G101700.1.v4.1 annot-version=v4.1
ATGTTTCTTTTTCCACTGAAAATCTTCTCTTTACTCGCGCTCTTCTCCTTTACTTTCCCACACACCTCCTCCTCCACCGCAGCCGGAGGCGACGGCGCTT
CCGTATGCATCATCGGCAGCGGAATTGGCGGCGCTTCAGTCGCCCACTTCCTCCGCCGGCACTCCACCAACCACCATCCAAAAATCCTAATCTTCGAAAG
ACACGCCATCGTCGGCGGTCGGATAGCCTCCGTGACAATCGGCGGCGACGCCTTCGAGGCCGGAGCTTCAATTCTCCACCCCAAAAACTACCACGCCTCG
AACTATACTAATTTCCTAAACTTGACGAGGAAGAGACCATCCAGTTCAGAGGGTTCCTTTTCATTGGGGATTTGGGATGGGAATGGGTTTGTTGTTAAAA
CCCTAAATCTGAAGTCAAAGTGGGGAATTGTGAACAAGATTGTGTCTTTTTTTAATGGGGTTTCTCTGTTTATGAGATATGGATTTTCACTTGTAAAAAT
GAAAGGCTTTGTGGACGAGACAGTGAATAAGTTTTTGAAGTATTATGAAGGAGTGGAAACAAGGCCTGTGTTTGAGAGTGTTGAGGAGATGTTGAAGTGG
GCTGGTTTGTTTAATCTTACAGGAAAGAGTTTGAAGGAGGAGCTGGTTGATGGTGTTAAATTGGCTCCTTTGTTGATTAAAGAATTGGTCACTGTCATTA
CACGAGTTAATTATGGTCAAGGTGTCAACATCAGTGGACTTGCTGGAGCAGTTTCCTTGGCAGGATCTGGTCGGGGTGTATGGGCTGTTGAAGGAGGGAA
CTGGCAGATAGCTGCTGGACTAATTAATAGTTCAGATGTTGAACTGTATCTCCATGAAGAAATTGATTCCATCTCTTATCTTGGAGAATATTATGAGCTC
AACTCCACAAAAGGAAATGCATACTCATGTGAAGTCGCAGTGGTTGCTACACCACTAGATGAATCGAGTATTCAATTTTCACCTCCAGTTTCAGTTCCTG
TGAGGCAATTACAGCACACACATGCAACTTTTGTGAGGGGCCTCGTAAATCCTGTATATTTTGGCCTGAAAGCTGTTTCAGAAATTCCAGAACTGGTGGC
CACAATAGAGGACCCTCGTCTTCCTTTCACAAGCATTTCAATCCTCAAGTGTTACAATGAGACAGATATGACATACAAAATATTCTCTCGTCAAGCAATG
ACTGATGCGTTACTGGATAGCATCTTTAGTGTGAGGAAGGAGACCGTTCAAATAAACTGGGGCGCATACCCTCATTACAAGGCTCCTGAAAAATTCTCAC
CCTTTATTTTGGATGGTAAGCATTTGTACTATGTGAACGCTTTTGAGAATGTAGCCAGCACCGTGGAGACAAGTGCAGTTGCAGCTGAAAATATAGCGCG
ACTCATCCTGTCAAGATTTTTTGGCAAGGATTCCTCATGTCCATCAGCCATAAAGAGAACCTCCTGTTCCAGTGCAGAGGCGTTGCATTCAGATACGTGA
AA sequence
>Potri.007G101700.1 pacid=42764908 polypeptide=Potri.007G101700.1.p locus=Potri.007G101700 ID=Potri.007G101700.1.v4.1 annot-version=v4.1
MFLFPLKIFSLLALFSFTFPHTSSSTAAGGDGASVCIIGSGIGGASVAHFLRRHSTNHHPKILIFERHAIVGGRIASVTIGGDAFEAGASILHPKNYHAS
NYTNFLNLTRKRPSSSEGSFSLGIWDGNGFVVKTLNLKSKWGIVNKIVSFFNGVSLFMRYGFSLVKMKGFVDETVNKFLKYYEGVETRPVFESVEEMLKW
AGLFNLTGKSLKEELVDGVKLAPLLIKELVTVITRVNYGQGVNISGLAGAVSLAGSGRGVWAVEGGNWQIAAGLINSSDVELYLHEEIDSISYLGEYYEL
NSTKGNAYSCEVAVVATPLDESSIQFSPPVSVPVRQLQHTHATFVRGLVNPVYFGLKAVSEIPELVATIEDPRLPFTSISILKCYNETDMTYKIFSRQAM
TDALLDSIFSVRKETVQINWGAYPHYKAPEKFSPFILDGKHLYYVNAFENVASTVETSAVAAENIARLILSRFFGKDSSCPSAIKRTSCSSAEALHSDT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G63910 FCLY farnesylcysteine lyase (.1) Potri.007G101700
[exp]
0 1
AT2G43080 AT-P4H-1 P4H isoform 1 (.1) Potri.002G232100
[exp]
2.23 0.7505
AT3G62020 GLP10 germin-like protein 10 (.1.2) Potri.010G240600
[exp]
4.35 0.7824 Pt-GER2.19
AT5G36110 CYP716A1 "cytochrome P450, family 716, ... Potri.011G137800
[exp]
5.74 0.7574
Potri.019G017302
[exp]
12.00 0.7450
AT4G08250 GRAS GRAS family transcription fact... Potri.009G075500
[exp]
13.41 0.6840
AT1G78955 CAMS1 camelliol C synthase 1 (.1) Potri.004G132500
[exp]
22.53 0.7596 LCOSC2.4
Potri.006G021800
[exp]
23.15 0.7552
AT2G23140 RING/U-box superfamily protein... Potri.006G251000
[exp]
26.87 0.6845
AT1G77120 ADH1, ATADH, AT... ARABIDOPSIS THALIANA ALCOHOL D... Potri.007G108601
[exp]
30.93 0.7141
AT5G07010 ATST2A ARABIDOPSIS THALIANA SULFOTRAN... Potri.001G036500
[exp]
32.86 0.6263

Potri.007G101700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.