Plant FIBer expression Database

Potri.007G102000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G39450 572 / 0 F-box family protein (.1)
AT5G39480 516 / 4e-178 F-box family protein (.1)
AT5G39460 502 / 3e-172 F-box family protein (.1)
AT5G39490 489 / 2e-167 F-box family protein (.1)
AT5G39470 78 / 1e-16 F-box family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G067300
[exp]
1047 / 0 AT5G39450 568 / 0.0 F-box family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015691
[exp]
726 / 0 AT5G39450 551 / 0.0 F-box family protein (.1)
Lus10037697
[exp]
725 / 0 AT5G39450 544 / 0.0 F-box family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0271 F-box PF00646 F-box F-box domain
Representative CDS sequence
>Potri.007G102000.3 pacid=42764889 polypeptide=Potri.007G102000.3.p locus=Potri.007G102000 ID=Potri.007G102000.3.v4.1 annot-version=v4.1
ATGCCTGAATTTTGTGGTTCAAACCTGCTTCTTGGGCTTCCTGATGATGTGTTTGCCATCATATCACGGTCCCTTTCTCCAAGGGACATGTGTACTTTAA
GTCTTTGCTGCCGAAGCTTATATGATCTTGTGGCATCCGAGAAAGTTTGGCGCACCCAATGTGACATGGTAGGAATTATCTCTCATCAGGATGTTATGGA
GTGGCGGAAGGGTGTATCATCTTATAGGGCGTTGTGTCGCTTCCTTGTTAGTGTTAAGCCATTAATTGGAATTTGGGTTCACCAAAATCCCGAGCTTGGT
AATGTAGTGTATGTCATGCCTGGTTTTGTATCTGTCGTTGGATGCCGGATTTTACCACAGGAGTTGGGCCCGTTAGGAATCGAGGAAGGTCCTATTTTAT
GGGCACCGGTGTTTGAAATAATAGGTGACCTTGATGGTTCTACCTCATTTTTCCTACATGGGGGAGAGAAAGGGAATGACCATGTTTATCCTGGTTCAGT
CAAGTCTGTAGGGAGGAAATGCAATGTCCTGTTGCTTGAGGTTGAGCCTAGGCAACAGAAGGGTAAATTATTCCCTAATAAAAGCTTTGCTTATAACTCA
GATAAGGAGCTAGCAAGAAAGCTTTCTAGGTCTCATAATGGACTGTCGTGGTCACAGAGGTTGATTATACAATGTGAGGCCAAGGTGCCCTTTAGCCGCT
TGTCTTTTAGTGACAGAAGAAAGTTGATTGAGGTTGTCACAAGCCAAGTTGGTCAAAAGGTACCCGATTTGGAAAACAGGCTGCTATTTCCTCGGTTGAG
GAATGATGAAGAGAATTTTCAGAAAGATATAGCACTCTTATTTGAACGGAGATCATTTCTTTTGAAAATTTGTAAGCTTGGTCAAGGCTTTAATTGGAAG
GAAGCTCCTGAAGTGCCTTCTGATCCTACGCAACTGCAATGGAGTGAGATTAGAAAGAGTCTTGATCGGTCAAGTGGGTCTCTGAATGAGGATGATAATC
AGATGCAATCCAACACAAAGAAAACCCTCGGTGGGTATCTCAGAGCATACATCAGACATATTTTGGGGAAGTCCCCCTCCGTAAATGGTAGCCACGCACA
TTCAAAGCACAGTTCTTCAAGCAGAGAGAGTAAACATGCACAGCTGCATGAGTTTTTAAGGTCAGGGGACACAATAGGGTTGACTTTACATGCGTCTAAG
ATGAGATTATCTTCTTATCGAGCATGGCCGAATATCCATGACAATCAGTTTGCCCTATACAAATTACCCATGCGAGTTCCAAGAGCTGATCAAGAATATG
CTGGTTTATGGGGAGGGACTTTTGGTTGGCCTCCCGGGAAGCCCACTGAAGACAAGCCCGGAAAAGCTCTGTTCTTTCTTTTGATCACTTACGAGGAGTC
TGAGGGACAAAGAAATCTCATTGCTACCAAGATATTAGAAGGCACCCACTATGTTCTGCATCCAAATGGCTCAGCAATGTTCGTTGTAAATATTGATGAG
CCTTCACAGGATCCATTTCCTTGGGATGTTGATGCAAATTCCTTTCCTTTGACCATTAAGCATGCATTTGCAGGGGAGGGTATAGCGAATGGGTATGGTT
TCAGATATCCAGGCTCAAAGCCTGGTTCCCTCTTTGTAATTCAAAATGATCTTCTTGCCTTTGTTTGGAAGGAGTCGAGAGCTGTCTTGAACATGCAGAG
ACTGAACTTACAAGAACTTTTGAAGAAAGGTGAACGGGTGCCTGCTTTACCTCCTAGTGACAACTTTTCATACTTGACCAAGTCCTACTCAAATGTCTTT
GCTGGCTTCTCAACTGCGTCAACTTGTTTGCCTTCACCAAGGCAAAAACATTTATAG
AA sequence
>Potri.007G102000.3 pacid=42764889 polypeptide=Potri.007G102000.3.p locus=Potri.007G102000 ID=Potri.007G102000.3.v4.1 annot-version=v4.1
MPEFCGSNLLLGLPDDVFAIISRSLSPRDMCTLSLCCRSLYDLVASEKVWRTQCDMVGIISHQDVMEWRKGVSSYRALCRFLVSVKPLIGIWVHQNPELG
NVVYVMPGFVSVVGCRILPQELGPLGIEEGPILWAPVFEIIGDLDGSTSFFLHGGEKGNDHVYPGSVKSVGRKCNVLLLEVEPRQQKGKLFPNKSFAYNS
DKELARKLSRSHNGLSWSQRLIIQCEAKVPFSRLSFSDRRKLIEVVTSQVGQKVPDLENRLLFPRLRNDEENFQKDIALLFERRSFLLKICKLGQGFNWK
EAPEVPSDPTQLQWSEIRKSLDRSSGSLNEDDNQMQSNTKKTLGGYLRAYIRHILGKSPSVNGSHAHSKHSSSSRESKHAQLHEFLRSGDTIGLTLHASK
MRLSSYRAWPNIHDNQFALYKLPMRVPRADQEYAGLWGGTFGWPPGKPTEDKPGKALFFLLITYEESEGQRNLIATKILEGTHYVLHPNGSAMFVVNIDE
PSQDPFPWDVDANSFPLTIKHAFAGEGIANGYGFRYPGSKPGSLFVIQNDLLAFVWKESRAVLNMQRLNLQELLKKGERVPALPPSDNFSYLTKSYSNVF
AGFSTASTCLPSPRQKHL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G39450 F-box family protein (.1) Potri.007G102000
[exp]
0 1
Potri.012G100001
[exp]
7.34 0.8395
AT4G03420 Protein of unknown function (D... Potri.019G103000
[exp]
7.74 0.8035
AT5G43120 ARM-repeat/Tetratricopeptide r... Potri.002G120800
[exp]
10.09 0.7737
AT2G27230 bHLH LHW, bHLH156 LONESOME HIGHWAY, transcriptio... Potri.009G017700
[exp]
10.19 0.7729
AT1G79740 hAT transposon superfamily (.1... Potri.018G135702
[exp]
10.95 0.8253
AT4G29810 MK1, ATMKK2 MAP KINASE KINASE 1, MAP kinas... Potri.006G146500
[exp]
11.22 0.7934 Pt-MEK1.1
AT4G08320 TPR8 tetratricopeptide repeat 8, Te... Potri.005G177400
[exp]
13.78 0.8093
Potri.008G005850
[exp]
15.09 0.7796
AT4G11860 Protein of unknown function (D... Potri.001G112300
[exp]
18.76 0.7942
AT1G63440 HMA5 heavy metal atpase 5 (.1) Potri.001G019100
[exp]
19.87 0.7600

Potri.007G102000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.