Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63940 721 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G77280 628 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G21590 624 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G16750 429 / 1e-141 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT4G35030 367 / 6e-120 Protein kinase superfamily protein (.1.2.3) AT5G65530 275 / 8e-85 Protein kinase superfamily protein (.1) AT2G18890 267 / 2e-82 Protein kinase superfamily protein (.1.2) AT3G24550 271 / 6e-81 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT1G55200 268 / 1e-79 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT3G05140 260 / 5e-79 RBK2 ROP binding protein kinases 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G067000 [exp] 1153 / 0 AT5G63940 690 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G182800 [exp] 789 / 0 AT1G77280 848 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.002G077900 [exp] 743 / 0 AT1G77280 797 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.004G175100 [exp] 501 / 3e-169 AT2G16750 564 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.009G134700 [exp] 484 / 2e-162 AT2G16750 555 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.002G019300 [exp] 368 / 5e-116 AT4G35030 387 / 7e-127 Protein kinase superfamily protein (.1.2.3) Potri.006G173700 [exp] 294 / 3e-90 AT5G57670 654 / 0.0 Protein kinase superfamily protein (.2) Potri.018G096100 [exp] 290 / 1e-88 AT5G57670 619 / 0.0 Protein kinase superfamily protein (.2) Potri.006G166600 [exp] 280 / 3e-87 AT2G18890 463 / 3e-163 Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024154 [exp] 805 / 0 AT1G77280 668 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10000968 [exp] 751 / 0 AT1G77280 844 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10028661 [exp] 747 / 0 AT1G77280 848 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10039518 [exp] 734 / 0 AT1G77280 610 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10014122 [exp] 439 / 4e-145 AT2G16750 507 / 4e-173 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10019787 [exp] 433 / 1e-142 AT2G16750 513 / 4e-175 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10013566 [exp] 310 / 3e-97 AT4G35030 327 / 3e-107 Protein kinase superfamily protein (.1.2.3) Lus10017273 [exp] 310 / 3e-96 AT4G35030 325 / 2e-105 Protein kinase superfamily protein (.1.2.3) Lus10013014 [exp] 277 / 1e-85 AT1G23540 572 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Lus10006957 [exp] 270 / 3e-84 AT2G18890 459 / 1e-162 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0039 [poplar] [flax] HUP PF00582 [poplar] [flax] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Potri.007G102400.3 pacid=42766452 polypeptide=Potri.007G102400.3.p locus=Potri.007G102400 ID=Potri.007G102400.3.v4.1 annot-version=v4.1 ATGGGCACTGATAGAACTGTCTCCGGTGGCTGTGGAGACGACGTTTGTTGTGGTCGTCGGAGTGGTGAAGGTGAAGTGGTGGTGGTGGGAGTGAAATTTG ATGGACCAAGTAAAGAACTTTTGACATGGTCATTAATGAAAATGGCACAGCCTGGGGACCATGTCATTGCTGTTCATGTTCTTGATTCTGCAACTGAATG TATGGCAGGGACTGCATCACTTCTGTCATTAGTGAAGACATTTGATTCATTGTTGGCTGTCTATGAAGGTTTCTGCAACTTAAAGCAGGTGGATTTGAAG CTAAAGGTGTGTAGAGGTGAATCAGTGAGGAAAATTCTGGTAAGGGAAGCAAAAGCAAATAGTGCTGCTAAGCTGATTGTGGGAACTTCCAAGAAACATC AGAAACTCTACTCTTCAACCTCAACAGCAAAGTATTGTGCTAAAAAATTGTCGAAAGGTTTCTCTGTCTACGCTGTTAGGAATGGCAAACTTGTGTTCCA GAGAGAAGCATCGGTTCCAAATATTGATACCTTACAAGATAAATTAAACCAAGAAAGTCGAAATTGCTCACAAAAATCTCAGATTAAGAATTCTATAAAT TGTACTCCACGCTTGCTATTGCTGGATGAATCTGGAGCACATGAATTGGAGGAGTCATGTAGGGATGGCAACGGGGATAACTCATTGGCTTTGGTACCAA TTCAAACAAACAAGCCATTATCGAATTCAGATTCCGATGTGAGTGAAGGATTAGTGGAGTCAAAACAGGGTTGGTCATTTCTCCGTCGGGTATTTTTCCA TAAGCAGCAGCACACAGAGAAAGCTCATATTAAAAAGATATCTGTGGTTAAATGGGTGTGTAGGTTACCTACTCGTAATTCTTCATCTGTGGTGTATCCA GATCAAAAACAGAATACGTCGCACGTGGATGAAGATCAAAACTCGAACTCAGAAAGAAAAAATTATGCAATAGTGCCAGTGGGGCCTGAGGTTGCTTGGA CTCCCATTTCACCATGTCATGGCTTGAATGGCATTCCAGAAGAGTTGAAAGACCTGCATGAGAAATATTCATCATCCTGTAGATTATTCAGCTATGAGGA ACTTGTGATGGCTACCTCTAACTTTATTCCTGAGAATATGGTAGGCAAGGGTGGTAGTAGTCATGTTTACAAAGGGTGCCTTCCTGATGGCAAGGAATTG GCAGTGAAAATTTTAAAGCCATCTGAGGATGTAATAAAAGAGTTCGTTGCAGAAATCGAGATCATTACAACTTTGCACCACAAGAACATAATCTCTCTAT TTGGTTTCTGTTTCGAGCACAACAAATTACTCCTAGTTTATGACTTTTTATCAAGAGGAAGCCTAGAAGAGAATCTGCATGGTAATAAGAAAGATTGGAA CGCAGTTGGTTGGCAAGAGAGATACAAGGTGGCTGTGGGTGTAGCGGAGGCACTTGATTACTTACACAATTGCTGTGATCAGCCTGTGATCCATAAGGAT GTAAAATCTTCGAACATACTTTTATCAGATGATTTTGAGCCACAGTTGTCAGATTTTGGATTGGCTAGCTGGGCTTCTACTTCATGCAATGCAACTTGCA CCGATGTTGCAGGAACCTTTGGTTACCTGGCCCCAGAGTATTTCATGCATGGCAAAGTAAGTGATAAAGTGGATGTATTTGCTTTCGGAGTTGTGCTCCT TGAGCTTCTCTCTGGAAGAATGCCTATTAACAGTGAACATCCGAAAGGCCAGGAGAGCCTTGTCATGTGGGCAAAGCCAATTCTTGAGGGTGGTAAAGTG TCCCAATTGCTTGACCCGCATCTAGGTAGTGAATATGATGATGATCACATCGAAAGAATGGTATTAGCTGCAACCCTTTGCATCAGACGTTCTCCTAGAT GTAGGCCACAAATGAGCCTCATTTTGAAGCTCCTCCAAGGGGATGAGGAAGTAAAGAATTGGGCAAGGCACCAAGTTTGTGCATCAGAAGAACTCGACGC CGTGGACGGGGAAGCGTTTCCTACCAATATTCAATCCCATCTTAACCTCGCATTACTTGATCTAGAGGATGATTCTCTTTCTATTAGCAGCACCGAGCAA GGCGTGTCAGTAGAAGATTACTTGCAAGGGAGATGGAGCCGCACATCAAGCTTCGACTAA
AA sequence Show only first row Show all	>Potri.007G102400.3 pacid=42766452 polypeptide=Potri.007G102400.3.p locus=Potri.007G102400 ID=Potri.007G102400.3.v4.1 annot-version=v4.1 MGTDRTVSGGCGDDVCCGRRSGEGEVVVVGVKFDGPSKELLTWSLMKMAQPGDHVIAVHVLDSATECMAGTASLLSLVKTFDSLLAVYEGFCNLKQVDLK LKVCRGESVRKILVREAKANSAAKLIVGTSKKHQKLYSSTSTAKYCAKKLSKGFSVYAVRNGKLVFQREASVPNIDTLQDKLNQESRNCSQKSQIKNSIN CTPRLLLLDESGAHELEESCRDGNGDNSLALVPIQTNKPLSNSDSDVSEGLVESKQGWSFLRRVFFHKQQHTEKAHIKKISVVKWVCRLPTRNSSSVVYP DQKQNTSHVDEDQNSNSERKNYAIVPVGPEVAWTPISPCHGLNGIPEELKDLHEKYSSSCRLFSYEELVMATSNFIPENMVGKGGSSHVYKGCLPDGKEL AVKILKPSEDVIKEFVAEIEIITTLHHKNIISLFGFCFEHNKLLLVYDFLSRGSLEENLHGNKKDWNAVGWQERYKVAVGVAEALDYLHNCCDQPVIHKD VKSSNILLSDDFEPQLSDFGLASWASTSCNATCTDVAGTFGYLAPEYFMHGKVSDKVDVFAFGVVLLELLSGRMPINSEHPKGQESLVMWAKPILEGGKV SQLLDPHLGSEYDDDHIERMVLAATLCIRRSPRCRPQMSLILKLLQGDEEVKNWARHQVCASEELDAVDGEAFPTNIQSHLNLALLDLEDDSLSISSTEQ GVSVEDYLQGRWSRTSSFD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63940			Protein kinase protein with ad...		Potri.007G102400 [exp]	0	1
AT2G43070		ATSPPL3	ARABIDOPSIS THALIANA SIGNAL PE...		Potri.014G150000 [exp]	1.41	0.6759
AT1G15860			Domain of unknown function (DU...		Potri.003G180300 [exp]	7.21	0.6095
AT5G49610			F-box family protein (.1)		Potri.007G027300 [exp]	17.20	0.5866
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Potri.004G127200 [exp]	23.19	0.6317
AT3G59350			Protein kinase superfamily pro...		Potri.017G036300 [exp]	25.92	0.5629
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Potri.002G216400 [exp]	27.05	0.5879
AT1G14340			RNA-binding (RRM/RBD/RNP motif...		Potri.017G081400 [exp]	27.33	0.6315
AT5G06270			unknown protein		Potri.009G161400 [exp]	32.09	0.5976
AT3G29200		ATCM1, CM1	ARABIDOPSIS THALIANA CHORISMAT...		Potri.017G088700 [exp]	50.10	0.5805
AT2G30580		BMI1A, DRIP2	DREB2A-interacting protein 2 (...		Potri.002G044100 [exp]	52.47	0.5507

Compare expression of checked genes

Potri.007G102400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.