Plant FIBer expression Database

Potri.007G102500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G55860 94 / 4e-20 UPL1 ubiquitin-protein ligase 1 (.1.2)
AT4G00930 77 / 6e-15 CIP4.1 COP1-interacting protein 4.1 (.1)
AT5G37190 77 / 8e-15 CIP4 COP1-interacting protein 4 (.1)
AT2G02770 63 / 2e-10 4'-phosphopantetheinyl transferase superfamily (.1)
AT1G30060 59 / 5e-10 COP1-interacting protein-related (.1)
AT4G00920 58 / 4e-09 COP1-interacting protein-related (.1)
AT4G00580 56 / 2e-08 COP1-interacting protein-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G052200
[exp]
79 / 3e-15 AT4G00930 95 / 2e-19 COP1-interacting protein 4.1 (.1)
Potri.005G066950
[exp]
68 / 2e-14 AT1G55860 41 / 8e-06 ubiquitin-protein ligase 1 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006453
[exp]
66 / 5e-11 AT5G37190 85 / 3e-16 COP1-interacting protein 4 (.1)
Lus10011397
[exp]
64 / 2e-10 AT4G00930 83 / 8e-16 COP1-interacting protein 4.1 (.1)
Lus10000702
[exp]
47 / 1e-05 AT2G01800 54 / 4e-08 COP1-interacting protein-related (.1.2.3)
PFAM info
Representative CDS sequence
>Potri.007G102500.17 pacid=42765658 polypeptide=Potri.007G102500.17.p locus=Potri.007G102500 ID=Potri.007G102500.17.v4.1 annot-version=v4.1
ATGGCATCAACACCTAGTGATGGTGAAGTAGCTGTTTTCACAGACACAAACATGGACACTCACATTGCCATGGGCATCTCTCCTGACATCACTGTTGCTG
ATTTCAAGAGAGAGCTGGAGAAAATGCACTTCAATTGTTTTCCGAAATTGGGAGAGATTAAAGTTTGTGAATTAAAGCAGGTAAGGAGAAATAATTGCTT
CTACCACTTGCTGGAGTCACTGCCTATAAAGTATGCTTTTCAGGGGCTCAAAGGAAATTGGTTTCTTCATGTGGAAATAAGGTCTTCAAATAGCTTTCGT
AATCAACACTTACCCCAGTGTCTAGCTGCAAAGGATGACCATATTTCTGATGGTAGCAATGCTATTGGCTCTCTCGTTACAAACACCAGAAAAAATGACA
TGACACCAAATGGTAATAACAAGAGGATAGAAGGTTTACTTGGCATCAAATCACCTGCAGAACTTCCTAAAACTGCCCCTTGTTTTGATAAAAGAAGTAA
GGAAAAGAAGAGACTGGCTGAAATCGACAGGGAATTTGATAGAAGTAAAAAATCCCCAAAACTTGCTGCCAGAGAGTGCTCTGGTTTGCTGACACCTGGA
AATGAAGTTAAGCCTGCAACAGAAGAACTTTCAAAAAATGCTCCTTATTTCAAGAAAACGAGCAAGGAAAAGAAGAGACTGGCTGACATCAACAAAGAAC
TTGACAGAAGTAAAAAAGCTCTAAATGTTGTTGACAAAGTGTCTTCTGGTTTGTTGACACCTAGAAACAAAGTTGAGCATGCAACAATAACCGGAGCGCT
TCCAAAAATTGTCGCTTGTTTCAAGAAAAAGAGCAAGGACAAGAAGAGAATGGCTGGCCTCAATAAGGAATTTGATAGAAGAAAAAAAGCTCCAAATCTT
GCTGCCAAAGTGTGCTCTGGTTTACTGACACCTATAAATCAAGTTAAGCCTGCAACCTTTTCCTGCCCAATGGTGGAGACTCCCACAGAGAGCCCACAAG
AAGTAATATTTGCTAAAATTAATGATTTCTCAAATATGCAAGTTTATACCTTACCACAGGTTGACATCAGAAGGCCCCCAAGAACACTGGCTTCTCCATT
GCCAACAGATCTTCGACCTGGAAGTTCAGGGAATAAGCTAAAAACAACTTCTGCAGTTGGGAAACGCATGATGACAGCTGCAAATAAGCTCAAAATTTCT
GCCAATAAACAAAGACCAGCGCTTTCTTTCTATAGATTCAGAGCTCCCTCCAGGGCTTCATTTGTGGTCAGGAGATCAATCTTTGATATCAGTGACAGTG
ATGAATGA
AA sequence
>Potri.007G102500.17 pacid=42765658 polypeptide=Potri.007G102500.17.p locus=Potri.007G102500 ID=Potri.007G102500.17.v4.1 annot-version=v4.1
MASTPSDGEVAVFTDTNMDTHIAMGISPDITVADFKRELEKMHFNCFPKLGEIKVCELKQVRRNNCFYHLLESLPIKYAFQGLKGNWFLHVEIRSSNSFR
NQHLPQCLAAKDDHISDGSNAIGSLVTNTRKNDMTPNGNNKRIEGLLGIKSPAELPKTAPCFDKRSKEKKRLAEIDREFDRSKKSPKLAARECSGLLTPG
NEVKPATEELSKNAPYFKKTSKEKKRLADINKELDRSKKALNVVDKVSSGLLTPRNKVEHATITGALPKIVACFKKKSKDKKRMAGLNKEFDRRKKAPNL
AAKVCSGLLTPINQVKPATFSCPMVETPTESPQEVIFAKINDFSNMQVYTLPQVDIRRPPRTLASPLPTDLRPGSSGNKLKTTSAVGKRMMTAANKLKIS
ANKQRPALSFYRFRAPSRASFVVRRSIFDISDSDE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G55860 UPL1 ubiquitin-protein ligase 1 (.1... Potri.007G102500
[exp]
0 1
AT5G12370 SEC10 exocyst complex component sec1... Potri.002G164100
[exp]
3.60 0.8215
AT1G02145 EBS4, ALG12 EMS-MUTAGENIZED BRI1\(BRASSINO... Potri.002G139200
[exp]
6.92 0.8150
Potri.010G031250
[exp]
20.12 0.7808
AT3G17310 DRM3, AtDRM3 domains rearranged methyltrans... Potri.010G152200
[exp]
21.81 0.7826
Potri.016G125901
[exp]
24.24 0.7509
AT2G14170 ALDH6B2 aldehyde dehydrogenase 6B2 (.... Potri.005G147700
[exp]
28.72 0.7770
AT5G19485 transferases;nucleotidyltransf... Potri.009G066400
[exp]
29.18 0.7904
AT1G45150 unknown protein Potri.014G180700
[exp]
33.61 0.7779
AT4G16460 unknown protein Potri.006G016100
[exp]
33.94 0.7046
AT5G10940 ASG2 ALTERED SEED GERMINATION 2, tr... Potri.002G103066
[exp]
34.32 0.7383

Potri.007G102500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.