Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13620 525 / 2e-175 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT1G05580 514 / 1e-170 ATCHX23 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) AT2G31910 467 / 1e-152 ATCHX21 cation/H+ exchanger 21, cation/H+ exchanger 21, cation/H+ exchanger 21 (.1) AT5G41610 382 / 3e-120 ATCHX18 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) AT4G23700 365 / 1e-113 ATCHX17 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) AT3G17630 347 / 3e-107 ATCHX19 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) AT3G53720 332 / 2e-101 ATCHX20 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) AT1G64170 323 / 5e-98 ATCHX16 cation/H+ exchanger 16, cation/H+ exchanger 16, cation/H+ exchanger 16 (.1) AT1G06970 300 / 2e-89 ATCHX14, CHX14 cation/hydrogen exchanger 14 (.1) AT2G30240 286 / 2e-84 ATCHX13 CATION/H+ EXCHANGER 13, Cation/hydrogen exchanger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G189100 [exp] 691 / 0 AT2G13620 595 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G105200 [exp] 570 / 0 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G111400 [exp] 518 / 5e-172 AT1G05580 645 / 0.0 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) Potri.004G131300 [exp] 504 / 6e-167 AT2G13620 640 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.001G096320 [exp] 381 / 5e-120 AT5G41610 1069 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.013G142301 [exp] 380 / 1e-119 AT5G41610 1067 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.003G134900 [exp] 351 / 1e-108 AT5G41610 989 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.010G005200 [exp] 346 / 1e-106 AT3G17630 1101 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.010G004800 [exp] 346 / 2e-106 AT3G17630 1091 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039138 [exp] 538 / 4e-179 AT2G13620 573 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10030013 [exp] 532 / 1e-177 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10035312 [exp] 526 / 1e-174 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10004932 [exp] 427 / 4e-137 AT2G13620 568 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10040881 [exp] 421 / 1e-134 AT2G13620 572 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10015268 [exp] 383 / 1e-119 AT2G13620 507 / 1e-166 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10032332 [exp] 360 / 6e-112 AT4G23700 1030 / 0.0 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) Lus10017540 [exp] 360 / 1e-111 AT5G41610 1013 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10025322 [exp] 289 / 2e-85 AT3G53720 793 / 0.0 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) Lus10013794 [exp] 272 / 4e-80 AT2G13620 332 / 1e-102 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [poplar] [flax] CPA_AT PF00999 [poplar] [flax] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Potri.007G102700.1 pacid=42766646 polypeptide=Potri.007G102700.1.p locus=Potri.007G102700 ID=Potri.007G102700.1.v4.1 annot-version=v4.1 ATGCTTGACCATAGTGAAACTGATATAGTAGCTTATGTTGCTGGCTTTCTTCTCGAAAGGACACCCTCTAATGGCGTGAATGCATGCTACTACGAGACTG TAAATGTTGATTTGTCTGTTTGGAAGATTTCAAACCCCCTGCTTAATAATGTTCCATACTTTGCTGTCCAGTTAAGCATCACTATATTCATGATTCACTT GCTTTTCTTCATCTTTAACTTCACCCGTCAACCTAGATTTTTCGCAGAGTTAATTACAGCTTGCATGCTTGGTCCAATATTCTTTAGGTCTTCATTTTTC CTTAGATACGTACGTCCGATAAACAGCAATGTGGTGTTGCAGACCATGGCAAACTTAGGCCTTGTTTATTACATGTTTCTTGTGGGTTTGGAGATTGATC TAAACATGGTAAGGAGAGTGGGGAAGAAAGCTTTCACCAATGCCGTGGCTGGAATTCTGTTTTCTATGGGCATGGGTGCCAGTCTGTATTGCTTATTTAC ACGAGATAAATCCATATTTCCTTCTGCCAGTCCTGTTGGCGGATTGTTTTGGGGTGTTGCTCTGACTGTCACAAGCTTTCCTGATCTTGCTCAAGTTCTT TCCGACATTAATCTCATCAGCACAGATCTTGGACAAATAGCCTTGTCTTCAGCTTTTGTTAGTGATTTAGCATCTTGGACTATGCTTATTATGACAATAA CCTGGCTCCATGGACGCAGTAAACTTTCCATCCTCCCAACTGTTGGCTTCATTATTCTTTGCTGGTTTGTGGTGCGTCCAGTCCTTAGCAAAATCAAAAG TTCCTCGAACAAAAGCAGTGGTAGAGACTTTTATGTATATGTTATTCTTGCTGGAGTGCTCATTTGCGGATTCATCACAGATGCTTGTGGCTCCACTTCT ATGACTGGGGCATTTGTTTTGGGACTTGTCACATCAAATGAGTTTGAGACAAGAATTTTGGAACAAGTCAATAATTTTGTGGCAGGAATTTTGCTTCCTT CCTACGTCATGGTTGTTGGAGGTAAAATTGACATATTGTTTTTGATGTCCAAAACTAGTGTAGTCACGCTGCTGGTGATTGTTGTCTTGGCTTTCTCGGT CAAGGTTTTGAGCTCTTTCCTTGTCTGCAAGGCCTTCGGTATCTCTGCTCGTGATGGTATTGCCCTTGGGATTCTTATGAACACAAAAGGCCTTTTGGCT CTGGTTGTTATTAACATCGGTGTCGATGTACAGGCTCTGGACTTTGCAACATTTCCTGTAATGGTGATTGTGTTTTTGGTGATGACAGCTCTTGTGAAAC CTTTTCCTTATTGGGTCAGTAAGTCTTCAAAGAATCTCAAGCAATACAAGCAAAGGACTATGGAAACAAGCAAAGATGATTCTGAATTTCGAATCATTAT GTGTGTTCATGAATCTCATCATCTATCAGGAATGAGCACCCTCTTGAAATTGTCTAATTCTACTAAACTATCACCAATCACTATTTTTGCTCTTCATCTA GTAGAACTCACAGGCCGTTCATCGGCAATGCTTATTGTTCATGATGCCTATAACGCCACTAACATCAGCCAACCCATTTTTGAAAGAGTTATATCAGACC ACGTCTCATCTCAGAGTCTTAGAAGCTATGGAAGGAGGGGAACAGGCCATCCGATTTCCATCCAACCAGTAACCGTCGTGTCTCCTTACGCCACCATGCA CAGAGAGATATGCTGCATTGCTGAGGACAAACATGTGACTTTAATTATTGTTCCATTTCACAAGGAAGGATGTGGAATTGACGTGGTGCAAGAGAATTCT TCTATCAGAACTGTCAACCACAACCTGCTTGCAAAAGCTCCATGTTCAGTCGGTATATTTGTTGACCGAGGGCTTCAATTAAGCATTCATGATATGGGTT TCAATCTATGGAAACAACAAATTAATGTTGCCATGCTCTTCACCGGTGGACCTGACGATCGCGAAGCCTTAGCCTACTCATGGAGAATGGCAGGCTCTCG CGAAGTGCGTTTAACAGTTGTGCACTTTCGTCCCGGAGAAAAGGCAAAAAATATAATGGAAGAGAGAAAAGAGAGTGAAAATTATAAACAGCTTGATGAA AAATACGTGAATGAACTCAGATTCAAGGCAAAGTTCAATGATTCCGTAATTTATTTAGAAAAGGTGGTAAATAACGGGGAAGAAATTTTAAGGACCACAA AGGAAATGTTTGATTATTATGATCTGTATATAGTGGGAAGGGGTCAAGGAGTGGCATCTCCTTTCACATCAGGGCTATCAGAGTGGAGTGACTGTAAAGA TCTAGGAGTATTGGGAGAGGCATTATCTACATCTGAGTTTGCACGAAATGCATCCATTCTTGTAATCCAACAATATTATGTTGCAGACACAGCTGAATAA
AA sequence Show only first row Show all	>Potri.007G102700.1 pacid=42766646 polypeptide=Potri.007G102700.1.p locus=Potri.007G102700 ID=Potri.007G102700.1.v4.1 annot-version=v4.1 MLDHSETDIVAYVAGFLLERTPSNGVNACYYETVNVDLSVWKISNPLLNNVPYFAVQLSITIFMIHLLFFIFNFTRQPRFFAELITACMLGPIFFRSSFF LRYVRPINSNVVLQTMANLGLVYYMFLVGLEIDLNMVRRVGKKAFTNAVAGILFSMGMGASLYCLFTRDKSIFPSASPVGGLFWGVALTVTSFPDLAQVL SDINLISTDLGQIALSSAFVSDLASWTMLIMTITWLHGRSKLSILPTVGFIILCWFVVRPVLSKIKSSSNKSSGRDFYVYVILAGVLICGFITDACGSTS MTGAFVLGLVTSNEFETRILEQVNNFVAGILLPSYVMVVGGKIDILFLMSKTSVVTLLVIVVLAFSVKVLSSFLVCKAFGISARDGIALGILMNTKGLLA LVVINIGVDVQALDFATFPVMVIVFLVMTALVKPFPYWVSKSSKNLKQYKQRTMETSKDDSEFRIIMCVHESHHLSGMSTLLKLSNSTKLSPITIFALHL VELTGRSSAMLIVHDAYNATNISQPIFERVISDHVSSQSLRSYGRRGTGHPISIQPVTVVSPYATMHREICCIAEDKHVTLIIVPFHKEGCGIDVVQENS SIRTVNHNLLAKAPCSVGIFVDRGLQLSIHDMGFNLWKQQINVAMLFTGGPDDREALAYSWRMAGSREVRLTVVHFRPGEKAKNIMEERKESENYKQLDE KYVNELRFKAKFNDSVIYLEKVVNNGEEILRTTKEMFDYYDLYIVGRGQGVASPFTSGLSEWSDCKDLGVLGEALSTSEFARNASILVIQQYYVADTAE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Potri.007G102700 [exp]	0	1
					Potri.004G213101 [exp]	6.48	0.5663
AT5G26330			Cupredoxin superfamily protein...		Potri.006G259000 [exp]	6.92	0.6983
AT5G41700		ATUBC8, UBC8	ARABIDOPSIS THALIANA UBIQUITIN...		Potri.013G158600 [exp]	7.74	0.6863
AT3G30383			Protein of unknown function (D...		Potri.017G039150 [exp]	13.74	0.6439
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Potri.001G308050 [exp]	33.40	0.6612
AT1G13420		SST1, ATST4B	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.004G031400 [exp]	33.67	0.5730
AT4G11850		PLDGAMMA1, MEE5...	maternal effect embryo arrest ...		Potri.004G218900 [exp]	48.92	0.6184
					Potri.003G073450 [exp]	64.10	0.5919
AT4G22080		RHS14	root hair specific 14 (.1)		Potri.004G007300 [exp]	73.49	0.5100
AT5G47670	CCAAT	NF-YB6, L1L	"nuclear factor Y, subunit B6"...		Potri.006G005000 [exp]	73.99	0.5100

Compare expression of checked genes

Potri.007G102700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.