Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CHR932
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63950 1103 / 0 CHR24 chromatin remodeling 24 (.1) AT2G18760 355 / 3e-104 CHR8 chromatin remodeling 8 (.1) AT1G03750 259 / 1e-72 SWI2, SNF2, CHR9 CHROMATIN REMODELING 9, switch 2 (.1) AT3G19210 245 / 1e-67 ATRAD54, CHR25 homolog of RAD54 (.1.2) AT3G54280 249 / 2e-67 RGD3, ATBTAF1, CHR16, CHA16 ROOT GROWTH DEFECTIVE 3, DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases (.1.2) AT5G66750 241 / 6e-67 CHR01, CHA1, SOM1, CHR1, SOM4, DDM1, ATDDM1 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) AT2G28290 241 / 1e-64 CHR3, SYD SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT3G06010 238 / 3e-64 ATCHR12 Homeotic gene regulator (.1) AT5G19310 236 / 9e-64 Homeotic gene regulator (.1) AT5G18620 225 / 2e-60 CHR17 chromatin remodeling factor17 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G066600 [exp] 1716 / 0 AT2G18760 353 / 7e-104 chromatin remodeling 8 (.1) Potri.005G226500 [exp] 357 / 2e-105 AT2G18760 1362 / 0.0 chromatin remodeling 8 (.1) Potri.013G068400 [exp] 257 / 6e-70 AT3G54280 2717 / 0.0 ROOT GROWTH DEFECTIVE 3, DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases (.1.2) Potri.007G026700 [exp] 248 / 2e-69 AT5G66750 993 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.019G129900 [exp] 246 / 5e-69 AT5G66750 1047 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.008G149900 [exp] 246 / 7e-67 AT3G06010 1485 / 0.0 Homeotic gene regulator (.1) Potri.017G012400 [exp] 243 / 1e-66 AT1G03750 1162 / 0.0 CHROMATIN REMODELING 9, switch 2 (.1) Potri.010G091200 [exp] 240 / 4e-65 AT3G06010 1408 / 0.0 Homeotic gene regulator (.1) Potri.004G141500 [exp] 234 / 1e-63 AT3G19210 1259 / 0.0 homolog of RAD54 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015690 [exp] 1169 / 0 AT5G63950 1133 / 0.0 chromatin remodeling 24 (.1) Lus10037696 [exp] 1162 / 0 AT5G63950 1121 / 0.0 chromatin remodeling 24 (.1) Lus10033909 [exp] 356 / 2e-104 AT2G18760 1569 / 0.0 chromatin remodeling 8 (.1) Lus10003543 [exp] 355 / 3e-104 AT2G18760 1543 / 0.0 chromatin remodeling 8 (.1) Lus10013625 [exp] 260 / 7e-71 AT3G54280 2684 / 0.0 ROOT GROWTH DEFECTIVE 3, DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases (.1.2) Lus10033669 [exp] 250 / 3e-69 AT1G03750 1148 / 0.0 CHROMATIN REMODELING 9, switch 2 (.1) Lus10041735 [exp] 244 / 1e-67 AT5G66750 1069 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Lus10012798 [exp] 241 / 1e-64 AT2G28290 1549 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10014047 [exp] 235 / 5e-64 AT3G19210 1256 / 0.0 homolog of RAD54 (.1.2) Lus10019866 [exp] 232 / 6e-63 AT3G19210 1257 / 0.0 homolog of RAD54 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] P-loop_NTPase PF04851 [poplar] [flax] ResIII Type III restriction enzyme, res subunit
Representative CDS sequence Show only first row Show all	>Potri.007G102800.8 pacid=42765856 polypeptide=Potri.007G102800.8.p locus=Potri.007G102800 ID=Potri.007G102800.8.v4.1 annot-version=v4.1 ATGGCGGCTCTTTCACAAAGCACACACAGAAAACCAATTAGTCTGAACGATCGCCATTATCGCCTCCTTCAAGACGTCTCTGCTCCTCCCAAACAACCAC CGCCTCCGCCGCCAGTAACGTCCTTCGAGGAAGAAGAAGAGAGCGTATTCAACGTGAAGTTCGACGGACGACGTCGTATTTGCAAAGCAGAACCAGAGGA TGATAATATCCCTAAATTCTGTGGAATCACTGATTTTGATTCTTCACCTGAAGAAGAAAAGCCTACGAAGGTTAGGATTGAAGGAAGACGGAGACTTTGC AAAGTATCTTCTGGAGATGATGGGGATGATGCAAGTAGAGAAGAAGTGAAAGATGATTCTAGTTTTGATGATATTGCCGATTTTGATTCACCCATTCCGT CTAAAAGTGTTGGTGATTGTGGTAATAATAAGGGTGTTAATGAGATAAAAGATATTCTTAGTGATTTGACCTCAAGGCTTGACCTTTTGTCAATTGAGAA AAAGAGAGTTCCTGAAAATAATAATGTGGTCAAGAAAGTTCATGTGGTTGAATATGCAAGTGCTGAGTCTTTGTTTTCTTTGTCGTCTAGTCCATCTGAT TCCTCATTGGATGTTATTAAAAATGGTGGAGGTGATGATGAGAGTGCTGTGGATGAGTATGAGGAGGGTGATTTATTGAGTGAGTCATTTGATGATGAGG TTAGCAGAGGGCTAAAGAAGAACGAATATGGAAGGGTGGATGAAAAGTTAGTCCCTGTGGGAAAACCTTTTGTGTCCAATGTTGTAGAAGATGAAAGTGA TGTGCAGATTGAGTCTAACCATGATGAATATGTAACTAGGGTGGAGAAAACTAAGAACGTTACTCAAAGAGTGAAGGAAAATGAACCCGATGGGTTCAAT GAGAGATTGAGGTCTGTAGGACGGTCTTCGGTGCTTAGTCTTCGAGATGAATCAGAGGATGATGAAGATGATTGTGTGGTTTTGACCGGAAAAAAGGTGG TCAAGAAAGTTGGGAGACCCGGTGCCATTGCCAAGTATAATGTATTATCTGGTGAATCTGAGACTGCTGTGTTGGAAAATCATGCAGAGTCAGAGGATGA TGGTTCCATTATCTTGCCTGGACTAAAATCTACTTACAAGTTACCTGGTAAAATTGCAAAAATGCTGTATCCACATCAGTGTGAAGGTTTAAGGTGGCTC TGGTCTTTGCATTGCAAGGGTAAGGGTGGAATCTTAGGAGATGACATGGGCTTGGGAAAAACGATGCAGATTTGTAGCTTTCTAGCAGGTCTCTTCCATT CGAAATTGATTAAGAGGGTATTGGTTGTGGCCCCTAAAACACTGCTCACTCATTGGATTAAAGAACTATCTGTTGTGGGGCTTTCTGGGAAGACTAGAGA ATACTTTGGGACCTCTTTAAAAGCTCGGGACTATGAGCTGCAATATATACTTCAGGACAAAGGAATTCTTCTCACAACTTATGATATTGTGCGGAACAAC TCAAAATCTTTACGAGGGGACCATTACTTTCTTGACGAGGAAAGTGAGGATAGTTATATTTGGGACTATATGATTCTAGATGAGGGACATCTCATAAAAA ATCCTAGTACTCAGAGAGCGAAAAGTTTGATTGAGATACCAAGTGCTCATTGTATTGTCATTAGTGGCACTCCGATTCAAAACAATCTTAAGGAATTGTG GGCTTTGTTCAACTTCTGTTGTCCTGACCTTCTTGGTGACAACAAGTGGTTTAAGCAAACATACGAGCATCCCATACTTCGTGGAAATGAAAAAAATGCT TCTGATAGGGAGAAGCGTATTGGTTCAACAGTTGCAATGGAACTAAGAGAACGCATTCAACCTTACTTTTTGCGCCGCATGAAGAATGAAGTATTCAAGG AAGATGATGCCACAACTGCTAAACTTTCCCGAAAGAATGAGATCATTGTGTGGCTTAGACTAACTACTTGCCAGCGGCAACTTTATGAAGCCTTTTTGCG GAGCGAGATTGTTCTCTCAGCTTTTGATGGCTCGCCATTGGCTGCACTAACGATATTGAAGAAAATATGTGATCACCCGCTTCTCTTGACAAAAAGAGCG GCTGAAGATTTGTTAGAGGGAATGGAGTCCATGCTAAATCCTGAAGATGTTGCTGTGGCTGAAAAATTGGCCATGCATGTTGCTGATGTTGCTGAAAGAA CTGACTTTCAAGAGAAGCATGACAGCATCTCCTGCAAGATCTCTTTTGTGTTGTCACTACTGGATAATTTGATTCCAGAGGGACATAATGTTCTTATATT CTCTCAAACTCGTAAGATGCTTAATCTCATCGAGGAATCTCTGGTGTCCAATGGTTATGAGTTCTTACGCATAGATGGTACGACAAAAGTTACTGATAGA GCAAAAATTGTTGATGACTTCCAAGAAGGAAATGGTGCTCCTATATTTTTGCTAACATCTCAGGTTGGCGGTCTTGGTCTTACACTTACAAAAGCAGATC GTGTGATTGTGGTTGATCCTGCTTGGAATCCTAGCACGGATAACCAAAGTGTTGATCGTGCATATCGAATTGGGCAAAAGAAGGATGTGGTCGTATACAG ATTAATGACTTGTGGAACTGTTGAAGAGAAAATTTATAGAAAGCAGATATTCAAGGGGGGGTTATTTAGAACAGCAACTGAAAACAAAGAACAAATTCGA TACTTTAGCCAACAGGATCTGCGGGAGCTATTCAGTCTCCCTAAGCAGGGGTTCAATATTTCCCTCACACAGCAACAATTACATGAAGAGCATGACAGCC AGCACAAAATGGATGAGTATCTGGAATCCCACATAAAATTCTTGGAGAGTCAAGGTATAGCAGGAGTCAGTCACCACAGCTTACTCTTCTCAAAGACAGA AACTGTACAACTTGCACAGGAAGAAGAGGATGAGATAAGGAAGAAAGTATCCACAATGGTGGGAAATTCATCGTCAAGCTATTCACTTGAACGCAATGTT GACGGGGCTGCTCGTGCTTTCAATCCCAAGGATGTAAATCTGAACAAGAAAACCTCTTCTCCAGATAGTGTGGGCAAACTGACAGAATCTGAAATCTTAG AGAGAATCAATCGGCTGTCACAATTACTTGGAAATAAGGTTACCGTTTTAAGGTTACCAGACCAAGGAGCGAAACTACAGAAGCAGATTAGTGAATTAAA TTCAGTGCTCATCGAGCTGAGGATGGAGAAAGCAACAGAGAGAGAAGGAGTCATCAGTCTGGATGATTTAACTGGGGAATTCGAAAGAGGATTGAATGTA TAG
AA sequence Show only first row Show all	>Potri.007G102800.8 pacid=42765856 polypeptide=Potri.007G102800.8.p locus=Potri.007G102800 ID=Potri.007G102800.8.v4.1 annot-version=v4.1 MAALSQSTHRKPISLNDRHYRLLQDVSAPPKQPPPPPPVTSFEEEEESVFNVKFDGRRRICKAEPEDDNIPKFCGITDFDSSPEEEKPTKVRIEGRRRLC KVSSGDDGDDASREEVKDDSSFDDIADFDSPIPSKSVGDCGNNKGVNEIKDILSDLTSRLDLLSIEKKRVPENNNVVKKVHVVEYASAESLFSLSSSPSD SSLDVIKNGGGDDESAVDEYEEGDLLSESFDDEVSRGLKKNEYGRVDEKLVPVGKPFVSNVVEDESDVQIESNHDEYVTRVEKTKNVTQRVKENEPDGFN ERLRSVGRSSVLSLRDESEDDEDDCVVLTGKKVVKKVGRPGAIAKYNVLSGESETAVLENHAESEDDGSIILPGLKSTYKLPGKIAKMLYPHQCEGLRWL WSLHCKGKGGILGDDMGLGKTMQICSFLAGLFHSKLIKRVLVVAPKTLLTHWIKELSVVGLSGKTREYFGTSLKARDYELQYILQDKGILLTTYDIVRNN SKSLRGDHYFLDEESEDSYIWDYMILDEGHLIKNPSTQRAKSLIEIPSAHCIVISGTPIQNNLKELWALFNFCCPDLLGDNKWFKQTYEHPILRGNEKNA SDREKRIGSTVAMELRERIQPYFLRRMKNEVFKEDDATTAKLSRKNEIIVWLRLTTCQRQLYEAFLRSEIVLSAFDGSPLAALTILKKICDHPLLLTKRA AEDLLEGMESMLNPEDVAVAEKLAMHVADVAERTDFQEKHDSISCKISFVLSLLDNLIPEGHNVLIFSQTRKMLNLIEESLVSNGYEFLRIDGTTKVTDR AKIVDDFQEGNGAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFRTATENKEQIR YFSQQDLRELFSLPKQGFNISLTQQQLHEEHDSQHKMDEYLESHIKFLESQGIAGVSHHSLLFSKTETVQLAQEEEDEIRKKVSTMVGNSSSSYSLERNV DGAARAFNPKDVNLNKKTSSPDSVGKLTESEILERINRLSQLLGNKVTVLRLPDQGAKLQKQISELNSVLIELRMEKATEREGVISLDDLTGEFERGLNV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63950		CHR24	chromatin remodeling 24 (.1)		Potri.007G102800 [exp]	0	1	CHR932
AT2G18760		CHR8	chromatin remodeling 8 (.1)		Potri.005G066600 [exp]	1.73	0.8044	CHR927
AT4G32730	MYB	ATMYB3R-1, PC-M...	C-MYB-LIKE TRANSCRIPTION FACTO...		Potri.018G038000 [exp]	3.16	0.7919	MYB222
AT4G14770	CPP	ATTCX2	TESMIN/TSO1-like CXC 2 (.1)		Potri.005G051100 [exp]	4.24	0.7790
AT5G25480		AtDNMT2, DNMT2	DNA METHYLTRANSFERASE 2, DNA m...		Potri.006G250800 [exp]	6.32	0.7289
AT5G23910			ATP binding microtubule motor ...		Potri.015G146000 [exp]	7.74	0.7031
AT1G74240			Mitochondrial substrate carrie...		Potri.012G066000 [exp]	9.59	0.7421
AT5G52950			unknown protein		Potri.012G033800 [exp]	13.07	0.7236
AT2G36010	E2F_DP	ATE2FA, E2F3	E2F transcription factor 3 (.1...		Potri.006G205100 [exp]	13.85	0.6868	Pt-E2F3.1,E2Fa_1
AT2G28450	C3HZnF		zinc finger (CCCH-type) family...		Potri.009G013000 [exp]	14.31	0.7407
AT1G17690		NOF1	nucleolar factor 1, unknown pr...		Potri.003G010000 [exp]	16.06	0.7371

Compare expression of checked genes

Potri.007G102800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.