Plant FIBer expression Database

Potri.007G103500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.007G103500.2 pacid=42766418 polypeptide=Potri.007G103500.2.p locus=Potri.007G103500 ID=Potri.007G103500.2.v4.1 annot-version=v4.1
ATGGATTTTATTACACAGTGCTACAGAGGGATAAGAGAGCAAACAAGGAGAAAAGCTGAGACAATAGCAAGAGCAAGAGCAAGGCAAGGGAGACCAAGCC
GAAACTCGATGACGAAACAATTACATAATACAAGGCATCCTACCTTTCTGAAAAACAAAACCCATAAAGCCCATGGATTTTTATTACATAGTGCTACAGA
GGGAAATTTCCATCAATTGAAAGAAAATGACGTCTCCCATTCTTTCAGTTATTTCAGTAAAGCCTTCACTTTTTCGAGCTTGATGACGCTGATAAGAATT
GGAGTACCCCGAGTAACATCTTGTTCTTGGTCTGCCCCCGTGGCAGCGGGTGTTTAG
AA sequence
>Potri.007G103500.2 pacid=42766418 polypeptide=Potri.007G103500.2.p locus=Potri.007G103500 ID=Potri.007G103500.2.v4.1 annot-version=v4.1
MDFITQCYRGIREQTRRKAETIARARARQGRPSRNSMTKQLHNTRHPTFLKNKTHKAHGFLLHSATEGNFHQLKENDVSHSFSYFSKAFTFSSLMTLIRI
GVPRVTSCSWSAPVAAGV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.007G103500
[exp]
0 1
AT5G40990 GLIP1 GDSL lipase 1 (.1) Potri.013G065100
[exp]
4.00 0.7510
AT2G18660 AtPNP-A, PNP-A,... plant natriuretic peptide A (.... Potri.006G252200
[exp]
4.58 0.7388
AT2G01300 unknown protein Potri.004G093000
[exp]
6.32 0.7093
AT1G14550 Peroxidase superfamily protein... Potri.010G236890
[exp]
9.38 0.7254
AT1G14550 Peroxidase superfamily protein... Potri.010G236870
[exp]
9.53 0.6570
Potri.002G070101
[exp]
11.22 0.7219
AT3G15760 unknown protein Potri.018G131100
[exp]
12.00 0.6736
AT3G23230 AP2_ERF ERF98 Integrase-type DNA-binding sup... Potri.010G072400
[exp]
14.83 0.6811
AT5G10830 S-adenosyl-L-methionine-depend... Potri.005G066200
[exp]
18.16 0.6952
AT5G14750 MYB WER1, WER, AtMY... WEREWOLF 1, WEREWOLF, myb doma... Potri.003G064600
[exp]
18.89 0.6406

Potri.007G103500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.