Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63970 525 / 0 Copine (Calcium-dependent phospholipid-binding protein) family (.1), Copine (Calcium-dependent phospholipid-binding protein) family (.2) AT3G01650 444 / 8e-155 RGLG1 RING domain ligase1 (.1) AT5G14420 435 / 1e-151 RGLG2 RING domain ligase2 (.1.2.3.4) AT1G79380 431 / 9e-151 Ca(2)-dependent phospholipid-binding protein (Copine) family (.1) AT1G67800 418 / 3e-145 Copine (Calcium-dependent phospholipid-binding protein) family AT5G61900 86 / 6e-18 CPN1, BON1 COPINE 1, BONZAI 1, Calcium-dependent phospholipid-binding Copine family protein (.1.3) AT5G61910 86 / 9e-18 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) AT5G07300 84 / 2e-17 BON2 BONZAI 2, Calcium-dependent phospholipid-binding Copine family protein (.1) AT1G08860 80 / 3e-16 BON3 BONZAI 3, Calcium-dependent phospholipid-binding Copine family protein (.1) AT5G19080 46 / 3e-05 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G065700 [exp] 653 / 0 AT5G63970 551 / 0.0 Copine (Calcium-dependent phospholipid-binding protein) family (.1), Copine (Calcium-dependent phospholipid-binding protein) family (.2) Potri.010G174800 [exp] 454 / 3e-159 AT1G79380 535 / 0.0 Ca(2)-dependent phospholipid-binding protein (Copine) family (.1) Potri.001G342200 [exp] 439 / 2e-153 AT5G14420 572 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.010G049600 [exp] 439 / 5e-153 AT5G14420 580 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.008G081300 [exp] 433 / 7e-152 AT1G79380 518 / 0.0 Ca(2)-dependent phospholipid-binding protein (Copine) family (.1) Potri.006G002600 [exp] 432 / 3e-151 AT5G14420 521 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.016G003000 [exp] 424 / 4e-148 AT5G14420 500 / 2e-176 RING domain ligase2 (.1.2.3.4) Potri.012G090100 [exp] 424 / 2e-147 AT5G14420 575 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.008G183600 [exp] 376 / 3e-128 AT5G14420 571 / 0.0 RING domain ligase2 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020885 [exp] 504 / 3e-179 AT5G63970 503 / 6e-179 Copine (Calcium-dependent phospholipid-binding protein) family (.1), Copine (Calcium-dependent phospholipid-binding protein) family (.2) Lus10022294 [exp] 443 / 8e-155 AT3G01650 608 / 0.0 RING domain ligase1 (.1) Lus10011405 [exp] 420 / 5e-146 AT5G14420 566 / 0.0 RING domain ligase2 (.1.2.3.4) Lus10006463 [exp] 404 / 7e-140 AT3G01650 547 / 0.0 RING domain ligase1 (.1) Lus10036879 [exp] 405 / 4e-139 AT3G01650 555 / 0.0 RING domain ligase1 (.1) Lus10014587 [exp] 389 / 5e-134 AT3G01650 517 / 0.0 RING domain ligase1 (.1) Lus10006231 [exp] 383 / 5e-132 AT3G01650 514 / 0.0 RING domain ligase1 (.1) Lus10032097 [exp] 384 / 1e-131 AT3G01650 514 / 0.0 RING domain ligase1 (.1) Lus10033043 [exp] 367 / 5e-125 AT3G01650 492 / 4e-172 RING domain ligase1 (.1) Lus10033491 [exp] 317 / 7e-107 AT5G14420 293 / 1e-97 RING domain ligase2 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0128 [poplar] [flax] vWA-like PF07002 [poplar] [flax] Copine Copine CL0229 [poplar] [flax] RING PF13920 [poplar] [flax] zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.007G103700.1 pacid=42766109 polypeptide=Potri.007G103700.1.p locus=Potri.007G103700 ID=Potri.007G103700.1.v4.1 annot-version=v4.1 ATGGATCATAACTATCAACGCAGGCAGCATCCGACTTACATAGCTGACAATTTCAACTCATTGGATCAGGTTATTTCTGCCCTGAGAGAGGCTGGTCTTG AATCATCTAATTTAATACTTGGTATTGATTTTACCAAGAGTAATGAGTGGACAGGCAGGCATTCATTTCATCGAAAAAGCCTCCATGCAATTGGTAGCAC ACTGAATCCCTATGAACAAGCAATCTCTATTATTGGCCGTACTCTGTCTCCTTTTGATGAAGATAATTTGATACCTTGTTTTGGATTTGGTGATGCATCA ACACATGATAAGTATGTATTCAGCTTTTATCCTGATAATCGACCTTGTAATGATCTTGAGGAAGCTCTTGCACGATACAGAGAGATTGTTCCACACTTAA AGTTGTCAGGCCCAACTTCATTTGCTGCAATTATTAATGCAGCAATTGACATTGTGGAGAAAAGTGGTCAGTACCATGTTCTTGTTATTATTGCAGATGG ACAGGTTACCAGGACTCCTGATACTCCTCCTGGACGGTTGAGTCCTCAAGAACAAGCAACGGTAAACTCCATAGTTGCTGCTAGCAAGCATCCTCTCTCA ATTATTTTTGTTGGAGTTGGGGATGGACCATGGAATGCAATGCAACAATTCGATGATAACATTCCTCAGCGTGAATTTGACAACTTTCAGTTCGTGAACT TCACTAAAATAATGTTAGACAACACCGAAGCATCAAAGAAGGAAACAGCCTTTGCACTTGCTGCCCTCATGGAAATTCCACTTCAGTACAGAGCCACTCA AAGACTTCAGCATACAGATCATGATTTAGTTGGTGGTCCACGCACAAGGCCACTCCCACCTCCTCGTGAAGTGATTGATCATGATAATGCTGTCAAATCA ATTCCACACATTACGAACTTTGAAACAGTTCAACCATCTACTTCAGTCGAACCGGTCTGCCCTATTTGCTTGACTAACCCAAAAGACATGGCTTTTGGAT GCGGTCATCTGACTTGCAGGGATTGTGGAGCAAGCCTTTCAACTTGCCCTATATGTCGACAGCCCATAACAACACGCCTGAAACTGTTTACCTGA
AA sequence Show only first row Show all	>Potri.007G103700.1 pacid=42766109 polypeptide=Potri.007G103700.1.p locus=Potri.007G103700 ID=Potri.007G103700.1.v4.1 annot-version=v4.1 MDHNYQRRQHPTYIADNFNSLDQVISALREAGLESSNLILGIDFTKSNEWTGRHSFHRKSLHAIGSTLNPYEQAISIIGRTLSPFDEDNLIPCFGFGDAS THDKYVFSFYPDNRPCNDLEEALARYREIVPHLKLSGPTSFAAIINAAIDIVEKSGQYHVLVIIADGQVTRTPDTPPGRLSPQEQATVNSIVAASKHPLS IIFVGVGDGPWNAMQQFDDNIPQREFDNFQFVNFTKIMLDNTEASKKETAFALAALMEIPLQYRATQRLQHTDHDLVGGPRTRPLPPPREVIDHDNAVKS IPHITNFETVQPSTSVEPVCPICLTNPKDMAFGCGHLTCRDCGASLSTCPICRQPITTRLKLFT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63970			Copine (Calcium-dependent phos...		Potri.007G103700 [exp]	0	1
AT4G04210		PUX4	plant UBX domain containing pr...		Potri.014G157200 [exp]	1.00	0.8658
AT4G19880			Glutathione S-transferase fami...		Potri.015G121600 [exp]	2.00	0.8410
AT3G10960		ATAZG1	AZA-guanine resistant1 (.1)		Potri.013G083300 [exp]	4.89	0.8246
AT4G39080		VHA-A3	vacuolar proton ATPase A3 (.1)		Potri.004G160400 [exp]	5.29	0.7988
AT3G53120		VPS37-1	Modifier of rudimentary (Mod(r...		Potri.006G119200 [exp]	6.92	0.7919
AT5G04740		ACR12	ACT domain repeats 12, ACT dom...		Potri.008G020700 [exp]	8.36	0.7690
AT4G36830		HOS3-1	GNS1/SUR4 membrane protein fam...		Potri.007G031500 [exp]	11.61	0.7549
AT2G24360			Protein kinase superfamily pro...		Potri.018G001800 [exp]	15.58	0.7807
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Potri.002G025350 [exp]	16.24	0.7400
					Potri.010G007250 [exp]	16.97	0.8084

Compare expression of checked genes

Potri.007G103700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.