Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14540 40 / 5e-05 CCAAT NF-YB3 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) AT2G13570 40 / 8e-05 CCAAT NF-YB7 "nuclear factor Y, subunit B7", nuclear factor Y, subunit B7 (.1) AT5G47640 38 / 0.0007 CCAAT NF-YB2, HAP3b "nuclear factor Y, subunit B2", nuclear factor Y, subunit B2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G065300 [exp] 71 / 4e-16 AT2G13570 201 / 2e-65 "nuclear factor Y, subunit B7", nuclear factor Y, subunit B7 (.1) Potri.016G085000 [exp] 41 / 4e-05 AT3G53340 247 / 1e-84 "nuclear factor Y, subunit B10", nuclear factor Y, subunit B10 (.1) Potri.014G167800 [exp] 40 / 0.0002 AT4G14540 221 / 1e-74 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.008G044800 [exp] 37 / 0.0008 AT2G37060 245 / 3e-84 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Potri.010G216600 [exp] 37 / 0.0008 AT2G37060 236 / 2e-80 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015058 [exp] 41 / 4e-05 AT2G37060 238 / 4e-81 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Lus10036637 [exp] 40 / 0.0001 AT4G14540 179 / 6e-58 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10033477 [exp] 40 / 0.0002 AT2G13570 211 / 4e-69 "nuclear factor Y, subunit B7", nuclear factor Y, subunit B7 (.1) Lus10020899 [exp] 39 / 0.0002 AT2G13570 213 / 9e-70 "nuclear factor Y, subunit B7", nuclear factor Y, subunit B7 (.1) Lus10035854 [exp] 39 / 0.0004 AT4G14540 181 / 4e-58 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10001177 [exp] 39 / 0.0005 AT4G14540 225 / 9e-76 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10001751 [exp] 39 / 0.0005 AT4G14540 219 / 2e-73 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10022514 [exp] 38 / 0.0008 AT4G14540 219 / 2e-73 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.007G103901.1 pacid=42766404 polypeptide=Potri.007G103901.1.p locus=Potri.007G103901 ID=Potri.007G103901.1.v4.1 annot-version=v4.1 ATGGAAGTAATCTACTTCTCCACAAAAGCAGCTTTATCTATTAAAAAATCAGCCAAGTCTTTTATTTTCCCTCTTCACATGCCTATTTTCCTGTTCTTCT TTCCAGTTATTTCAGTCCACAAAACAAGCCTTAACATTACTATCAAAGTTAAAACCAATCTGTTACACTTCGGAGAGGGCGTGTGTGTGCATGGGAGAGA AACGGAAGATGAAAACCATGGAAATAGAACGGATGGCCACGGTGGAGGAAGCCCAGAAAACCCATGTTTAAAGAGTTGCAGCAGCAACAATCACAACAGT AAAGAGCAAGAACACTTCCTTCCTATAGCAAATGTTGGCAGAGTTATGAATAAAGCGATTCCAATATGA
AA sequence Show only first row Show all	>Potri.007G103901.1 pacid=42766404 polypeptide=Potri.007G103901.1.p locus=Potri.007G103901 ID=Potri.007G103901.1.v4.1 annot-version=v4.1 MEVIYFSTKAALSIKKSAKSFIFPLHMPIFLFFFPVISVHKTSLNITIKVKTNLLHFGEGVCVHGRETEDENHGNRTDGHGGGSPENPCLKSCSSNNHNS KEQEHFLPIANVGRVMNKAIPI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G13570	CCAAT	NF-YB7	"nuclear factor Y, subunit B7"...		Potri.007G103901 [exp]	0	1
AT1G67330			Protein of unknown function (D...		Potri.001G056300 [exp]	2.00	0.9706
AT4G01240			S-adenosyl-L-methionine-depend...		Potri.004G116900 [exp]	2.44	0.9517
AT4G38190		ATCSLD4	ARABIDOPSIS THALIANA CELLULOSE...		Potri.009G170000 [exp]	3.16	0.9375	ATCSLD4.1
AT5G05820			Nucleotide-sugar transporter f...		Potri.009G040800 [exp]	3.46	0.9628
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Potri.003G146600 [exp]	4.89	0.9487
AT1G13680			PLC-like phosphodiesterases su...		Potri.004G117500 [exp]	5.47	0.9520
					Potri.007G088800 [exp]	7.93	0.9468
AT1G67856			RING/U-box superfamily protein...		Potri.010G047100 [exp]	8.83	0.8907
					Potri.015G001700 [exp]	9.79	0.9258
AT5G66900			Disease resistance protein (CC...		Potri.007G038700 [exp]	12.36	0.8777

Compare expression of checked genes

Potri.007G103901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.