Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20680 524 / 0 TBL16 TRICHOME BIREFRINGENCE-LIKE 16 (.1.2.3) AT5G64020 509 / 7e-180 TBL14 TRICHOME BIREFRINGENCE-LIKE 14 (.1) AT2G37720 449 / 5e-155 TBL15 TRICHOME BIREFRINGENCE-LIKE 15 (.1) AT3G06080 182 / 7e-52 TBL10 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G06230 179 / 1e-51 TBL9 TRICHOME BIREFRINGENCE-LIKE 9 (.1.2) AT5G19160 172 / 3e-48 TBL11 TRICHOME BIREFRINGENCE-LIKE 11 (.1) AT3G11570 164 / 1e-45 TBL8 TRICHOME BIREFRINGENCE-LIKE 8 (.1) AT3G62390 165 / 2e-45 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1) AT2G30010 161 / 7e-45 TBL45 TRICHOME BIREFRINGENCE-LIKE 45 (.1) AT1G01430 160 / 5e-44 TBL25 TRICHOME BIREFRINGENCE-LIKE 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G065100 [exp] 749 / 0 AT5G64020 533 / 0.0 TRICHOME BIREFRINGENCE-LIKE 14 (.1) Potri.005G064875 [exp] 612 / 0 AT5G64020 478 / 4e-170 TRICHOME BIREFRINGENCE-LIKE 14 (.1) Potri.006G140300 [exp] 530 / 0 AT5G20680 595 / 0.0 TRICHOME BIREFRINGENCE-LIKE 16 (.1.2.3) Potri.008G203900 [exp] 174 / 5e-49 AT5G19160 652 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Potri.002G195800 [exp] 175 / 1e-48 AT3G62390 593 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Potri.009G072800 [exp] 166 / 9e-47 AT5G58600 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.016G074800 [exp] 166 / 2e-46 AT3G11570 506 / 2e-179 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Potri.006G071500 [exp] 167 / 3e-46 AT5G20590 633 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.002G054400 [exp] 166 / 4e-46 AT3G06080 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038577 [exp] 586 / 0 AT5G64020 502 / 1e-177 TRICHOME BIREFRINGENCE-LIKE 14 (.1) Lus10039914 [exp] 480 / 2e-167 AT5G20680 597 / 0.0 TRICHOME BIREFRINGENCE-LIKE 16 (.1.2.3) Lus10027651 [exp] 473 / 1e-164 AT5G20680 595 / 0.0 TRICHOME BIREFRINGENCE-LIKE 16 (.1.2.3) Lus10037877 [exp] 450 / 1e-158 AT5G64020 404 / 1e-141 TRICHOME BIREFRINGENCE-LIKE 14 (.1) Lus10004225 [exp] 176 / 3e-50 AT3G11570 518 / 0.0 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10002430 [exp] 177 / 6e-50 AT3G62390 531 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Lus10034039 [exp] 176 / 1e-49 AT3G06080 553 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10034041 [exp] 174 / 4e-49 AT5G19160 605 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10041219 [exp] 167 / 1e-46 AT5G19160 514 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10034087 [exp] 166 / 2e-46 AT5G15890 490 / 1e-172 TRICHOME BIREFRINGENCE-LIKE 21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF13839 [poplar] [flax] PC-Esterase GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p CL0264 [poplar] [flax] PF14416 [poplar] [flax] PMR5N PMR5 N terminal Domain
Representative CDS sequence Show only first row Show all	>Potri.007G104300.1 pacid=42765729 polypeptide=Potri.007G104300.1.p locus=Potri.007G104300 ID=Potri.007G104300.1.v4.1 annot-version=v4.1 ATGAAAGGAGCAATTTTTTATAGATTGAGGGGAAGACACTTTTCTGCTACTCTGCTCTTCCTTACTTTTACAACCTTTTTTTTCTGGACGTGGGAAAAGA ATCCTTTTGCTACTACTTTGTGGTCAGCGCAAGAGCAGTTTAATTTTCATACTTCAGAGTTTGTTGTTGATACCCTCAAAGGCTCCTCTTCTGATTCTTT GACCCCAAAGAAGCATGTTGAGGAAACAGATTCTGATTCTACAAGCTCAGGAGAATCACAAATACCAGAAAAAGAATTTGACGCCTCAAATTTTACCAAC TCATTTGCTCCTCAATTGGAAGATAGGGATGCAGATAGGACACCGTCTTCTAAGATAGAAGACTGCAATTATTCCAAGGGTAGATGGGTTGCAGAAAGCA GGCGGCCTTTGTATTCTGGGTTTGAATGTAAACAGTGGTTATCTGAAATGTGGGCGTGTAGACTAACCCAGCGAACAGATTTTTCCTTTGAAGGATATCG TTGGCAGCCAGATAACTGCAAAATCCTGGAGTTTGAGAAATCTGCTTTCTTGAGAAGGATGCAGGACAAAACAATTGCATTTATAGGAGATTCATTAGGT AGGCAACAATTCCAATCTTTGATGTGCATGGCCACTGGTGGAGAATGGAGGGCAGATGTTGAAGATGTGGGCAAAGAATATGGTCTTTTTAAACCTCGTG GAGCCATTCGTCCTAATGGCTGGGCTTATCGGTTTTCAAACACCAATACCACCATTTTGTATTACTGGTCATCAACCCTTGCTGACTTAGAACCTTTGAA CATCACTGACAAAGCCACAGATGTTGCTATGCATTTGGATCGCGTGCCAGCCTTCATGAGGCAATTCCTCCATCAGTTTGATGTGTTAGTTCTTAATACA GGACATCATTGGAACAGAGGGAAGATTACAGCGAACCATTGGGTGATGTATGTAAACGGGAAACCCCTTAAAGATAGACGACTCATGGCAGTTGGGAATG CCAAGAATCTTACAGTGCATAGTGTTGCCAGGTGGCTTGATTCACAACTCCCTTCTCATCCCCGACTTAGGGCATTCTTCAGGACCATCTCACCAAGGCA TTTCCGCAACGGAGACTGGAACACCGGGGGTAATTGTGACAACACCACTCCCTTTACTGGAGGGAGCGAAGTCTCACAGGATGAATCAAGTGATCCAGTT ATTGCGGCTGCTGTTAAAGGTACAAACATCACTCTTCTGGATATCACTGCTCTCTCTGATCTAAGAGACGAAGGTCACATCTCAAGGTATAGTGTTAAGG CAACAGCAGGCGTAAATGATTGCTTGCATTGGTGCTTGCCTGGCATTCCAGACACATGGAATGAACTTCTTGTTGCACAGATATAG
AA sequence Show only first row Show all	>Potri.007G104300.1 pacid=42765729 polypeptide=Potri.007G104300.1.p locus=Potri.007G104300 ID=Potri.007G104300.1.v4.1 annot-version=v4.1 MKGAIFYRLRGRHFSATLLFLTFTTFFFWTWEKNPFATTLWSAQEQFNFHTSEFVVDTLKGSSSDSLTPKKHVEETDSDSTSSGESQIPEKEFDASNFTN SFAPQLEDRDADRTPSSKIEDCNYSKGRWVAESRRPLYSGFECKQWLSEMWACRLTQRTDFSFEGYRWQPDNCKILEFEKSAFLRRMQDKTIAFIGDSLG RQQFQSLMCMATGGEWRADVEDVGKEYGLFKPRGAIRPNGWAYRFSNTNTTILYYWSSTLADLEPLNITDKATDVAMHLDRVPAFMRQFLHQFDVLVLNT GHHWNRGKITANHWVMYVNGKPLKDRRLMAVGNAKNLTVHSVARWLDSQLPSHPRLRAFFRTISPRHFRNGDWNTGGNCDNTTPFTGGSEVSQDESSDPV IAAAVKGTNITLLDITALSDLRDEGHISRYSVKATAGVNDCLHWCLPGIPDTWNELLVAQI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20680		TBL16	TRICHOME BIREFRINGENCE-LIKE 16...		Potri.007G104300 [exp]	0	1
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Potri.005G146900 [exp]	1.00	0.9464
AT3G24630			unknown protein		Potri.018G082300 [exp]	1.41	0.9153
AT1G53840		ATPME1	pectin methylesterase 1 (.1)		Potri.003G072700 [exp]	2.23	0.9092	Pt-MPE3.1
AT2G27080			Late embryogenesis abundant (L...		Potri.004G197600 [exp]	2.82	0.9103
AT1G27200			Domain of unknown function (DU...		Potri.008G192000 [exp]	7.48	0.9005
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Potri.002G114200 [exp]	8.60	0.8794	Pt-ATCSLC12.1
AT4G23020			unknown protein		Potri.001G110900 [exp]	10.09	0.8705
					Potri.006G073450 [exp]	19.33	0.8197
AT5G54490		PBP1	pinoid-binding protein 1 (.1)		Potri.019G120600 [exp]	22.04	0.9125
AT1G33760	AP2_ERF		Integrase-type DNA-binding sup...		Potri.013G101200 [exp]	22.36	0.8471

Compare expression of checked genes

Potri.007G104300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.