Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13600 835 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 437 / 8e-143 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G02750 428 / 1e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G25360 425 / 3e-138 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G13650 418 / 1e-132 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53360 410 / 1e-132 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22690 409 / 1e-131 unknown protein AT2G29760 406 / 1e-131 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G33680 404 / 1e-130 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 400 / 1e-129 MEF22 mitochondrial editing factor 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G085500 [exp] 454 / 1e-149 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.013G058900 [exp] 443 / 3e-142 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G155100 [exp] 436 / 4e-142 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G136200 [exp] 433 / 7e-142 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.009G044700 [exp] 432 / 2e-141 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G006800 [exp] 419 / 5e-137 AT2G33680 780 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G027800 [exp] 416 / 8e-135 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 418 / 1e-133 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G048800 [exp] 412 / 2e-133 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009269 [exp] 889 / 0 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015898 [exp] 832 / 0 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016425 [exp] 436 / 3e-142 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10035164 [exp] 420 / 1e-135 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022890 [exp] 416 / 2e-134 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031994 [exp] 416 / 4e-134 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008967 [exp] 414 / 6e-133 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030581 [exp] 423 / 8e-133 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030908 [exp] 423 / 9e-133 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10018223 [exp] 409 / 1e-132 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.007G104700.2 pacid=42765032 polypeptide=Potri.007G104700.2.p locus=Potri.007G104700 ID=Potri.007G104700.2.v4.1 annot-version=v4.1 ATGGTGATAATGGAATGGCAAGACATGGGTTGGTCAAGCAAATCATTGGCAGTGCTGGTGGTGGCGGCATCTTTTTCACTGACTCGTCACCATTTGCAAA ACTCTTGGATTTATGCGTCAAACTCAGGTCCTCTAGGGATGCTCGTAGCGTACATGGACGTCTTATCCAAACCCCATTTTGCGAAGAAGTTTTTATACAG AATAGGCTTATTGATGTTTATGGAAAATGTGGTTATTTGGATTATGCACGCAAAGTGTTTGATAGAATGTCTGAGAGAAATGTTTTTAGTTAATTCGATT ATTAGTACTTTAATGAGATGGGGTTTTGTTGATGAGAGTGCATGGTTGTTTTCATTAATGCCTGAGAAGGATCAGTGCTCGTGGAATTCGATGATTGCTG GGTTTGCGCAACATGATCGGTTTGAAGAAGCTTTGGATTGGTTTGTTAGGATGCATAGGGATGATTTTGTGCTGAATGATTATTCCTTTGGTAGTGGTCT TAGTGCATGTTCGAGGTTAAAGGACTTGAAATTGGGTGCTCAAATTCATGGTTTGATATCAAAATCGAAGTACTCCTTGGATGTTTTTATGGGGTCTGGT CTTATTGATTTTTATTCAAAATGTGGTTTAGTGGGTTGCGCCCGAAGGGTTTTTGACGGGATGGAGGAGAAGAATGTTGTTTCCTGGAACTGCTTGATTA CTTGTTATGAACAAAACGGTCCTGCAATTGAAGCTCTGGAAGCTTTTGGAAGGATGACAGAGCTTGGGTTCAAACCAGATGAGGTTACGCTGGCTAGCGT CGTCAGTGCTTGTGCAACTTTGGCGGCATTCAAAGAGGGTGTGCAAATTCATGCCCTTGTGGTGAAATCTGATAAATTTAGGAATGATCTTATCTTGGGC AATGCATTGGTTGATATGTATGCAAAATGTGGTAGAGTTAATGAAGCGAGATGTGTTTTTGATAGGATGCCTGTTAGGAATGCGGTGTCTGAAACCACCA TGGTCAGTGGGTATGCAAAGTCAGCAAGTGTGAAAGCCGCAAGATCAATGTTTGCTACAATAAAGCAGAAGGATATAGTTTCTTGGAATGCACTTATTGC GGGATACACACAGAATGGGGAGAATGAAGAGGCACTGGGACTCTTTCGAATGCTAAAGAGGGAATCTGTTTGTCCGACCCACTACACCTTTGGGAACCTG CTGAATGCCTCTGCAAATCTTGCTGATCTGGAGCTTGGCAGGCAGGCACATAGTCATGTTGTTAAGCATGGATTTAGGTTCCAGTCTGGTGAAGAGCCTG ATATTTTTGTGGGAAATTCTCTCATAGACATGTATATGAAATGTGGATCTGTTGAAGAGGGACTTCGGGTTTTTGAAAACATGGTGGAAAAGGATCATGT ATCATGGAACACCATGATAATAGGGTATGCACAAAATGGCTACGGAATGGAGGCCCTCGAACTATTTCAGAAAATGCTGGAATCTGGAGAGAAACCAGAC CATGTTACTATGATTGGTACTCTATGTGCTTGTAGCCACGCAGGGCTTGTTGAAGAGGGACGGCGTTACTTTTTCTCAATGACTAAGGAACATGGTTTGC TACCAGTGAAGGACCATTATACATGTATGGTCGATTTACTAGGCCGAGCTGGTTGCCTTGAGGAAGCAAAGGATTTGATAGAGTCAATGCCTAAGCAGCC TGATGCTGTTGTCTGGAGCTCTTTGCTTAGTGCTTGTAAAGTTCATCGCAACATTACTCTAGGGAAGTATGTGGCAGAGAAGATTTTTGAAATTGACCCT ACAAGCTCTGGACCATATGTTCTTCTTGCAAATATGTATTCTGAGCTTGGCAGATGGGGTGATGCTGTAAGTGTAAGAAAACTGATGAGGCGTCGCGGAG TAGTTAAACAGCCTGGTTGTAGCTGGATTGACATACAGAGCAATGTGCATGTTTTTATGGTGAAAGACAAAAGGCATCCTCAGAAGAAGGAAATCTATTC AATCTTGAAACTTCTTACAAAGCACATGAGGCAAGCTGGATATGTCCCTGATGCCAGTGATCATGAGGCTTACGAGGAACCAAGCGAATTAGAATCAAGC TCTTGTTTCCATATGGAAATGCAAGCAGAGGCTGCCGTCATGTAA
AA sequence Show only first row Show all	>Potri.007G104700.2 pacid=42765032 polypeptide=Potri.007G104700.2.p locus=Potri.007G104700 ID=Potri.007G104700.2.v4.1 annot-version=v4.1 MVIMEWQDMGWSSKSLAVLVVAASFSLTRHHLQNSWIYASNSGPLGMLVAYMDVLSKPHFAKKFLYRIGLLMFMENVVIWIMHAKCLIECLREMFLVNSI ISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSG LIDFYSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKEGVQIHALVVKSDKFRNDLILG NALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGNL LNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPD HVTMIGTLCACSHAGLVEEGRRYFFSMTKEHGLLPVKDHYTCMVDLLGRAGCLEEAKDLIESMPKQPDAVVWSSLLSACKVHRNITLGKYVAEKIFEIDP TSSGPYVLLANMYSELGRWGDAVSVRKLMRRRGVVKQPGCSWIDIQSNVHVFMVKDKRHPQKKEIYSILKLLTKHMRQAGYVPDASDHEAYEEPSELESS SCFHMEMQAEAAVM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G13600			Pentatricopeptide repeat (PPR)...		Potri.007G104700 [exp]	0	1
AT2G37320			Tetratricopeptide repeat (TPR)...		Potri.016G082200 [exp]	4.35	0.8431
AT3G21465			unknown protein		Potri.008G205300 [exp]	7.74	0.8230
AT4G30930		WRKY32, NFD1	NUCLEAR FUSION DEFECTIVE 1, Ri...		Potri.015G095700 [exp]	9.27	0.8374	Pt-RPL21.5
AT4G13330			S-adenosyl-L-methionine-depend...		Potri.008G171900 [exp]	12.64	0.7699
AT4G15010			Mitochondrial substrate carrie...		Potri.001G222400 [exp]	12.64	0.8000
AT2G42710			Ribosomal protein L1p/L10e fam...		Potri.014G143000 [exp]	13.03	0.8202
AT5G22330		ATTIP49A, RIN1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.004G199100 [exp]	13.74	0.7832
AT5G11630			unknown protein		Potri.006G237800 [exp]	15.87	0.8016
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Potri.006G039600 [exp]	16.06	0.8026
AT3G25970			Pentatricopeptide repeat (PPR)...		Potri.007G146800 [exp]	17.05	0.8258

Compare expression of checked genes

Potri.007G104700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.