Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13610 950 / 0 ABCG5 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) AT1G53270 523 / 1e-179 ABCG10 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) AT5G52860 476 / 2e-161 ABCG8 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) AT4G25750 475 / 4e-161 ABCG4 ATP-binding cassette G4, ABC-2 type transporter family protein (.1) AT5G19410 475 / 1e-160 ABCG23 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) AT3G55110 387 / 2e-125 ABCG18 ATP-binding cassette G18, ABC-2 type transporter family protein (.1) AT3G55090 378 / 1e-121 ABCG16 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) AT2G39350 372 / 3e-119 ABCG1 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) AT5G13580 369 / 4e-118 ABCG6 ATP-binding cassette G6, ABC-2 type transporter family protein (.1) AT3G55130 366 / 6e-117 ABCG19, ATWBC19 ATP-binding cassette G19, white-brown complex homolog 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G064300 [exp] 1221 / 0 AT2G13610 900 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Potri.011G112100 [exp] 587 / 0 AT1G53270 753 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.001G393300 [exp] 583 / 0 AT1G53270 756 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.013G117700 [exp] 572 / 0 AT1G53270 666 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.009G070100 [exp] 508 / 3e-173 AT5G19410 707 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Potri.015G027600 [exp] 476 / 4e-161 AT5G52860 733 / 0.0 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) Potri.010G213400 [exp] 382 / 1e-122 AT3G55090 1014 / 0.0 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) Potri.014G080200 [exp] 376 / 8e-121 AT2G37360 955 / 0.0 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Potri.008G047900 [exp] 376 / 2e-120 AT3G55090 1008 / 0.0 ATP-binding cassette G16, ABC-2 type transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029905 [exp] 755 / 0 AT2G13610 743 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10004496 [exp] 732 / 0 AT2G13610 729 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10000737 [exp] 496 / 2e-168 AT5G19410 754 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10033637 [exp] 496 / 2e-167 AT5G19410 735 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10017683 [exp] 493 / 2e-167 AT5G19410 731 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10027545 [exp] 481 / 9e-163 AT5G52860 781 / 0.0 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) Lus10008500 [exp] 474 / 9e-160 AT5G19410 758 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10023465 [exp] 379 / 3e-121 AT2G39350 1064 / 0.0 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) Lus10025281 [exp] 358 / 1e-113 AT2G37360 1035 / 0.0 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10017707 [exp] 307 / 4e-95 AT2G37360 456 / 6e-151 ATP-binding cassette G2, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0181 [poplar] [flax] ABC-2 PF01061 [poplar] [flax] ABC2_membrane ABC-2 type transporter
Representative CDS sequence Show only first row Show all	>Potri.007G104801.3 pacid=42766251 polypeptide=Potri.007G104801.3.p locus=Potri.007G104801 ID=Potri.007G104801.3.v4.1 annot-version=v4.1 ATGGAGCAAAAGAGTGCAATGAAGAAACAAGGCTGGGAGATTGAAGCAATAGGGATCACCTACAAAATCTCCACCAAAAAAAGAGAGCACCCTTTTAAAA TCTTCACCAAAAAGCAAGAAATAAATCAAGAACCGAAACAACAAGTGACAAATCTTGAAGAAGCAAGCCTTGGAGCCAGGCATGTCTTGAAAGATGTTTA TTGCAAAGCAAAGCCATGGGAAATCCTCGCTATTGTTGGTCCAAGTGGAGCAGGTAAATCATCCTTACTTGAAGTCCTAGCTGGGAAACTCACCCCACAA AGTGGTTCCATTTTTGTCAACCAAAACCCTATTAACAAAGCTCAGTTCAAGAAGGCTTCAGGCTATGTCACCCAAAAAGACACCCTCTTTCCTCTCCTTA CAGTTGAAGAAACACTCATGTTTAGCGCCAAGCTACGTCTAAGGCTTCCTCAAGATCAACTGAGCTCTGAGGTTAAGTTCTTAATGCATGAGTTAGGCTT GGATCACGTAGCCATGACTCGAGTTGGTGACGACCGGGTTCGTGGGATATCCGGCGGAGAAAGGCGTCGTGTGTCGATAGGAGTTGATGTCATTCATGAT CCTGAAGTGCTAATTCTTGATGAACCAACTTCAGGTCTTGATAGCACTTCTGCTTTGCAGATTATTGATATGCTGAAGCTCATGGCAGAGACAAGGGGCC GAACTATAATACTAAGCATTCATCAACCCGGATTTCGGATTGTGAAGTTGTTCAATTCAGTACTTCTGATGGCTAATGGATCAGTCTTGCATCATGGCAC GGTGGATCAGCTTGGTGTTAATTTGAGGACAATGGGAATGCAGCTTCCTCTTCATGCCAATGTTGTTGAATTTGCTTTAGAGTCAATTGACACCGTTCAA CAACAAAGGAAAGTTTTGCAGCAAGAAACTCAACCACAACTGCTATCATCATCTACAACAAAATCTCGGCAGAAGAAAGTAGAAGTTGGCGAGAGTAGAA GTGGCAAGTTCACTCTTCAACAACTCTTTCAGCAGTCTAAAGTGGTAGATGAGGAAAGTATCGATTTTGGGTTTGATTTTCCTCTTGGTTTTGCTAACTC AAGGTTGCAAGAAACTTTGATTCTCACTCATAGGTTCTCCAAGAACATTTTCAGAACCAAGGAGCTTTTTGCATGCCGAACGATTCAAATGCTGATTTCT GGACTTGTTTTGGGTTCTATCTTCTACAACCTTAAAGATGATTTGACTGGAGCAGAAGAAAGGGTAGGACTATTTGCTTTTATACTGACTTTCTTGTTAT CTTGCACAACAGAAGCTCTACCGATCTTCTTGCAAGAAAGGGAGATTCTTATGAAGGAGACATCTTGTGGGAGCTATAGAGTCTCATCATATGCCATTGC CAATGGACTAGTTTACTTGCCATTTCTACTCATCCTTGCCATACTATTCACAATTCCACTATATTGGCTAGTGGGACTGAACCCAAATTTCATGGCATTC ATGCATTTCTTGTTGTTAATCTGGTTGATTCTCTACACAGCGAATTCGGTTGTGGTATGTTTCAGTGCTCTAGTACCTAACTTCATCGTTGGAAATTCGG TGATTTCAGGGGTGATGGGATCATTCTTCTTGTTCTCTGGCTACTTCATATCGAAGCATGGAATGCCAAATTATTGGATTTTTATGCACTATATATCGCT GTTTAAGTATCCATTTGAAGGGTTTTTGATAAATGAGTTCTCAAATTCAGGGAAGTGCTTGGAGTACATGTTTGGGAAATGCATGGTTAGTGCAGAAGAT TTGCTTAGAGAAGAAGGATATGGAGAGGATGGTAAGTGGAGGAATGTGGTGATCATGGTATGTTTCATCTTGGTTTACAGGTTTATTTCTTATGTTATTC TTAGGTTAAGATACTGTCCTAGCATCAGCAGTTTCAAGGGTTCACTTGTTTGA
AA sequence Show only first row Show all	>Potri.007G104801.3 pacid=42766251 polypeptide=Potri.007G104801.3.p locus=Potri.007G104801 ID=Potri.007G104801.3.v4.1 annot-version=v4.1 MEQKSAMKKQGWEIEAIGITYKISTKKREHPFKIFTKKQEINQEPKQQVTNLEEASLGARHVLKDVYCKAKPWEILAIVGPSGAGKSSLLEVLAGKLTPQ SGSIFVNQNPINKAQFKKASGYVTQKDTLFPLLTVEETLMFSAKLRLRLPQDQLSSEVKFLMHELGLDHVAMTRVGDDRVRGISGGERRRVSIGVDVIHD PEVLILDEPTSGLDSTSALQIIDMLKLMAETRGRTIILSIHQPGFRIVKLFNSVLLMANGSVLHHGTVDQLGVNLRTMGMQLPLHANVVEFALESIDTVQ QQRKVLQQETQPQLLSSSTTKSRQKKVEVGESRSGKFTLQQLFQQSKVVDEESIDFGFDFPLGFANSRLQETLILTHRFSKNIFRTKELFACRTIQMLIS GLVLGSIFYNLKDDLTGAEERVGLFAFILTFLLSCTTEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLLILAILFTIPLYWLVGLNPNFMAF MHFLLLIWLILYTANSVVVCFSALVPNFIVGNSVISGVMGSFFLFSGYFISKHGMPNYWIFMHYISLFKYPFEGFLINEFSNSGKCLEYMFGKCMVSAED LLREEGYGEDGKWRNVVIMVCFILVYRFISYVILRLRYCPSISSFKGSLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G13610		ABCG5	ATP-binding cassette G5, ABC-2...		Potri.007G104801 [exp]	0	1
AT1G18140		LAC1, ATLAC1	laccase 1 (.1)		Potri.012G048900 [exp]	15.65	0.8484
AT3G09220		LAC7	laccase 7 (.1)		Potri.016G106300 [exp]	21.02	0.8278
AT4G10380		AtNIP5;1, NIP5;...	NOD26-LIKE MIP 8, NOD26-LIKE M...		Potri.011G146900 [exp]	23.87	0.8147
AT4G38960	CO		B-box type zinc finger family ...		Potri.009G124400 [exp]	25.59	0.7058
AT3G10985		WI12, ATWI-12, ...	ARABIDOPSIS THALIANA WOUND-IND...		Potri.019G125900 [exp]	27.92	0.8237
AT1G57820		ORTH2, VIM1	VARIANT IN METHYLATION 1, ORTH...		Potri.001G067700 [exp]	39.79	0.7046
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.001G127400 [exp]	60.59	0.7973
AT3G09220		LAC7	laccase 7 (.1)		Potri.016G106100 [exp]	73.19	0.7963
AT3G62270			HCO3- transporter family (.1)		Potri.014G116000 [exp]	74.41	0.7136
AT5G13140			Pollen Ole e 1 allergen and ex...		Potri.001G060500 [exp]	98.04	0.6587

Compare expression of checked genes

Potri.007G104801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.