Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64530 183 / 4e-59 NAC ANAC104, XND1 Arabidopsis NAC domain containing protein 104, xylem NAC domain 1 (.1) AT1G61110 130 / 1e-36 NAC ANAC025 NAC domain containing protein 25 (.1) AT1G69490 121 / 6e-34 NAC NAP, ANAC029, ATNAP Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) AT1G52890 115 / 3e-31 NAC ANAC019 NAC domain containing protein 19 (.1) AT1G01720 113 / 1e-30 NAC ATAF1, ANAC002 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT3G15510 114 / 2e-30 NAC ATNAC2, ANAC056, NARS1 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) AT3G15500 113 / 2e-30 NAC ATNAC3, ANAC055 NAC domain containing protein 55, NAC domain containing protein 3 (.1) AT5G63790 112 / 4e-30 NAC ANAC102 NAC domain containing protein 102 (.1) AT1G77450 111 / 4e-30 NAC ANAC032 NAC domain containing protein 32 (.1) AT3G04070 112 / 1e-29 NAC ANAC047 NAC domain containing protein 47 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G064100 [exp] 297 / 5e-104 AT5G64530 199 / 3e-65 Arabidopsis NAC domain containing protein 104, xylem NAC domain 1 (.1) Potri.001G206900 [exp] 194 / 3e-63 AT5G64530 221 / 2e-74 Arabidopsis NAC domain containing protein 104, xylem NAC domain 1 (.1) Potri.003G022800 [exp] 192 / 1e-62 AT5G64530 231 / 5e-78 Arabidopsis NAC domain containing protein 104, xylem NAC domain 1 (.1) Potri.001G404400 [exp] 126 / 7e-35 AT3G15510 345 / 1e-117 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Potri.011G046700 [exp] 124 / 2e-34 AT1G61110 331 / 8e-113 NAC domain containing protein 25 (.1) Potri.004G038000 [exp] 124 / 4e-34 AT1G61110 332 / 3e-113 NAC domain containing protein 25 (.1) Potri.011G123500 [exp] 123 / 9e-34 AT3G15510 323 / 4e-109 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Potri.008G089000 [exp] 120 / 4e-33 AT1G69490 331 / 6e-115 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Potri.010G166200 [exp] 117 / 5e-32 AT1G69490 305 / 1e-104 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000206 [exp] 202 / 2e-66 AT5G64530 264 / 5e-91 Arabidopsis NAC domain containing protein 104, xylem NAC domain 1 (.1) Lus10035648 [exp] 202 / 2e-66 AT5G64530 264 / 5e-91 Arabidopsis NAC domain containing protein 104, xylem NAC domain 1 (.1) Lus10035647 [exp] 202 / 2e-66 AT5G64530 264 / 5e-91 Arabidopsis NAC domain containing protein 104, xylem NAC domain 1 (.1) Lus10010747 [exp] 196 / 6e-64 AT5G64530 259 / 4e-89 Arabidopsis NAC domain containing protein 104, xylem NAC domain 1 (.1) Lus10011215 [exp] 135 / 1e-38 AT1G61110 305 / 1e-102 NAC domain containing protein 25 (.1) Lus10018469 [exp] 135 / 2e-38 AT1G61110 301 / 5e-101 NAC domain containing protein 25 (.1) Lus10032657 [exp] 131 / 1e-36 AT3G15510 353 / 1e-120 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Lus10043095 [exp] 130 / 2e-36 AT3G15510 351 / 1e-119 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Lus10036773 [exp] 127 / 7e-36 AT1G69490 318 / 1e-109 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Lus10037156 [exp] 125 / 3e-35 AT1G69490 318 / 2e-109 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.007G105000.1 pacid=42766098 polypeptide=Potri.007G105000.1.p locus=Potri.007G105000 ID=Potri.007G105000.1.v4.1 annot-version=v4.1 ATGGGAGATCATGGCTGCAGTGGTAACCTTCCTCCGGGATTTGTTTTCAGCCCAACTGATGAAGAACTTGTCCTTCACTTTCTTCATCGCAAGGCCTCAC TCTTACCTTGCAACCCTGACATCATTCCTGATCTTGGTCTCTATCCCCATGATCCCTGGCAACTTGAAGGCAAGGCTTTGTCAAGTGGAAACCAGTGGTT CTACTTTAGTCAAGTGATGGAGAACCAAGTCACAGAAAATGGGTTTTGGAAATCATTAGATACTGAAGAACCTATATTTAGTAGTGCTGGTAAGAAGGTT GGATTAAAGAAATACCTCGTGTATTGCATTGGTGCTGAAGGTGTAGAAACAAGCTGGATGATGCAGGAATATCATCTTTGCAACAGTAAATTGAGCGGCA CATCTTACAAGAGAAAGAAAAAACTGGATTGCCATCAATGGATCCTGTGTCGAGTCTATGAAAGGGAGGGAAGCTGCATCCAAAACGTCGGCAATACCAC TGATGATGATGACGGGACTGAACTTTCATGTCTAGATGAGATGTTCTTATCAATGGATGATGATCTTGATGATATAAGTTTTCCAAATTAG
AA sequence Show only first row Show all	>Potri.007G105000.1 pacid=42766098 polypeptide=Potri.007G105000.1.p locus=Potri.007G105000 ID=Potri.007G105000.1.v4.1 annot-version=v4.1 MGDHGCSGNLPPGFVFSPTDEELVLHFLHRKASLLPCNPDIIPDLGLYPHDPWQLEGKALSSGNQWFYFSQVMENQVTENGFWKSLDTEEPIFSSAGKKV GLKKYLVYCIGAEGVETSWMMQEYHLCNSKLSGTSYKRKKKLDCHQWILCRVYEREGSCIQNVGNTTDDDDGTELSCLDEMFLSMDDDLDDISFPN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64530	NAC	ANAC104, XND1	Arabidopsis NAC domain contain...		Potri.007G105000 [exp]	0	1
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Potri.014G037900 [exp]	3.16	0.8642	Pt-CYP82.16
AT1G71692	MADS	XAL1, AGL12	XAANTAL1, AGAMOUS-like 12 (.1)		Potri.013G102600 [exp]	4.89	0.8673
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Potri.011G054300 [exp]	9.16	0.8708
					Potri.016G013350 [exp]	9.59	0.8304
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.002G261800 [exp]	9.89	0.8392
					Potri.011G165300 [exp]	11.22	0.8548
					Potri.002G023950 [exp]	11.83	0.7594
AT5G17980			C2 calcium/lipid-binding plant...		Potri.013G055500 [exp]	12.64	0.8551
					Potri.001G058500 [exp]	12.84	0.8190
AT5G56520			unknown protein		Potri.003G221500 [exp]	13.34	0.7479

Compare expression of checked genes

Potri.007G105000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.