Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63980 535 / 0 SUPO1, RON1, ALX8, HOS2, FRY1, ATSAL1, SAL1 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) AT5G64000 394 / 2e-136 ATSAL2, SAL2 Inositol monophosphatase family protein (.1) AT5G09290 392 / 6e-136 Inositol monophosphatase family protein (.1) AT5G63990 388 / 3e-134 Inositol monophosphatase family protein (.1.2) AT5G54390 252 / 9e-81 ATAHL, AHL HAL2-like (.1) AT4G05090 135 / 8e-36 Inositol monophosphatase family protein (.1) AT1G31190 54 / 6e-08 IMPL1 myo-inositol monophosphatase like 1 (.1) AT3G02870 45 / 3e-05 VTC4 Inositol monophosphatase family protein (.1.2.3) AT4G39120 41 / 0.001 HISN7, IMPL2 HISTIDINE BIOSYNTHESIS 7, myo-inositol monophosphatase like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G063900 [exp] 678 / 0 AT5G63980 529 / 0.0 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) Potri.011G124700 [exp] 265 / 1e-85 AT5G54390 489 / 4e-174 HAL2-like (.1) Potri.011G044900 [exp] 264 / 4e-84 AT5G54390 502 / 2e-177 HAL2-like (.1) Potri.004G036400 [exp] 258 / 8e-82 AT5G54390 497 / 7e-176 HAL2-like (.1) Potri.004G033200 [exp] 135 / 1e-35 AT4G05090 522 / 0.0 Inositol monophosphatase family protein (.1) Potri.012G120492 [exp] 51 / 8e-07 AT1G31190 551 / 0.0 myo-inositol monophosphatase like 1 (.1) Potri.010G156500 [exp] 45 / 3e-05 AT3G02870 421 / 7e-151 Inositol monophosphatase family protein (.1.2.3) Potri.015G120400 [exp] 45 / 6e-05 AT1G31190 540 / 0.0 myo-inositol monophosphatase like 1 (.1) Potri.010G156300 [exp] 44 / 8e-05 AT3G02870 438 / 4e-157 Inositol monophosphatase family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015663 [exp] 461 / 3e-162 AT5G63980 454 / 2e-159 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) Lus10037677 [exp] 432 / 2e-152 AT5G63980 420 / 9e-148 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) Lus10038597 [exp] 261 / 8e-84 AT5G54390 505 / 2e-180 HAL2-like (.1) Lus10037888 [exp] 256 / 8e-82 AT5G54390 497 / 6e-177 HAL2-like (.1) Lus10018453 [exp] 237 / 1e-73 AT5G54390 442 / 2e-154 HAL2-like (.1) Lus10011231 [exp] 231 / 2e-71 AT5G54390 447 / 4e-156 HAL2-like (.1) Lus10006739 [exp] 132 / 2e-34 AT4G05090 469 / 8e-166 Inositol monophosphatase family protein (.1) Lus10007817 [exp] 124 / 2e-31 AT4G05090 436 / 4e-152 Inositol monophosphatase family protein (.1) Lus10018305 [exp] 53 / 2e-07 AT1G31190 573 / 0.0 myo-inositol monophosphatase like 1 (.1) Lus10017976 [exp] 45 / 5e-05 AT4G39120 429 / 9e-151 HISTIDINE BIOSYNTHESIS 7, myo-inositol monophosphatase like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0171 [poplar] [flax] Phospoesterase PF00459 [poplar] [flax] Inositol_P Inositol monophosphatase family
Representative CDS sequence Show only first row Show all	>Potri.007G105100.1 pacid=42765071 polypeptide=Potri.007G105100.1.p locus=Potri.007G105100 ID=Potri.007G105100.1.v4.1 annot-version=v4.1 ATGAATCTTGTTAGCATTATTGCAAAACCCGAAATCACAATCACGAAAAACCCTTTTCTTGTTTCCTCTCCCCTTTTATTTTTCTCTAACAAAACCAAAA GCAAAACCTCAATTCCAAGAGTATTATCCTCTTCAATGTCTTACAATAAAGAACTTGCTGCTGCCAAGAAAGCTGTCTCTCTTGCTGCCCGCCTCTGCCA GAAGATGCAAAAAGCTATCTTGCAATCAGATGTCCAATCAAAATCAGATAAAAGTCCCGTCACTGTTGCTGATTATGGCTCTCAAGCACTAGTTAGTTAT GCTCTGCAGCGGGAGCTTCCTTCTGAACTATTCTCCTTAGTGGCGGAGGAGGATTCAGAAGATCTCCTCAAGGATGGTGGCCAGGAAACACTAGAGCGAA TCACAAAACTTGTTAACGATATTCTAGCTACCGATGGATCATATAGTGATTCTACTTTATCCACTGAAGATATTGTCAAGGCCATTGACTGTGGAAAATC TGAAGGTGGTTCTCGAGGCAGACACTGGGTTCTGGACCCAATAGATGGCACTAAAGGGTTTTTAAGAGGAGATCAATATGCAATAGCTTTAGCATTGCTA GATGAAGGGACAGTAGTGTTGGGCGTCTTGGCTTGTCCCAATCTTCCGTTACCTTCCATTGCTGGTGGCTCTCAGCATTCTTTGCCTGGCGAAGTTGGTT GCCTTTTCTTTTCTGTAGTTGGCGGTGGAACTTACATGCAGCCACTGGATAGCTCTTCAGCAGTGAAGGTGCAAGTCAACGCTACTGACAATCCTGAAGA AGCATCACTCTTTGAATCATATGAAGCAGCACACTCCATGCATGATCTATCTAGTTCAATTGTCAAAAAACTTGGTGTCAAAGCACCACCAGTTAGAATT GATAGCCAAGCAAAGTATGGCGCTCTGTCTAGAGGAGATGGGGTCATATACTTGCGATTTCCACATAAAGGTTACCGTGAAAAAATATGGGATCATGCTG CTGGATGCATAGTTGTATCAGAAGCTGGGGGACTGGTCACAGATGTTGCGGGGAACCCCTTAGATTTTTCAAGAGGAAGATACCTGGATCTTGACACAGG CATCATTGTTACGAATCAGAAACTGATGCCATTACTTTTGAAGGCAGTTAGAGAATCCATAGAGGAGAAAGCTTCATCATTGTGA
AA sequence Show only first row Show all	>Potri.007G105100.1 pacid=42765071 polypeptide=Potri.007G105100.1.p locus=Potri.007G105100 ID=Potri.007G105100.1.v4.1 annot-version=v4.1 MNLVSIIAKPEITITKNPFLVSSPLLFFSNKTKSKTSIPRVLSSSMSYNKELAAAKKAVSLAARLCQKMQKAILQSDVQSKSDKSPVTVADYGSQALVSY ALQRELPSELFSLVAEEDSEDLLKDGGQETLERITKLVNDILATDGSYSDSTLSTEDIVKAIDCGKSEGGSRGRHWVLDPIDGTKGFLRGDQYAIALALL DEGTVVLGVLACPNLPLPSIAGGSQHSLPGEVGCLFFSVVGGGTYMQPLDSSSAVKVQVNATDNPEEASLFESYEAAHSMHDLSSSIVKKLGVKAPPVRI DSQAKYGALSRGDGVIYLRFPHKGYREKIWDHAAGCIVVSEAGGLVTDVAGNPLDFSRGRYLDLDTGIIVTNQKLMPLLLKAVRESIEEKASSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63980		SUPO1, RON1, AL...	suppressors of PIN1 overexpres...		Potri.007G105100 [exp]	0	1
AT5G37360			unknown protein		Potri.013G050300 [exp]	3.00	0.8374
AT1G78560			Sodium Bile acid symporter fam...		Potri.003G008700 [exp]	4.58	0.8203
AT4G16060			unknown protein		Potri.010G006000 [exp]	5.91	0.7859
AT2G29260			NAD(P)-binding Rossmann-fold s...		Potri.001G244900 [exp]	6.00	0.8168
AT2G37020			Translin family protein (.1.2)		Potri.006G126200 [exp]	6.00	0.7884
AT3G24000			Tetratricopeptide repeat (TPR)...		Potri.005G060600 [exp]	6.24	0.7477
AT5G54810		ATTSB1, TRP2, T...	TRYPTOPHAN BIOSYNTHESIS B, TRY...		Potri.011G136000 [exp]	9.16	0.7582
AT1G80600		WIN1	HOPW1-1-interacting 1 (.1)		Potri.017G053500 [exp]	10.95	0.7528
AT5G11880			Pyridoxal-dependent decarboxyl...		Potri.009G119300 [exp]	12.84	0.7789
AT5G66631			Tetratricopeptide repeat (TPR)...		Potri.005G128600 [exp]	15.09	0.7789

Compare expression of checked genes

Potri.007G105100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.