Plant FIBer expression Database

Potri.007G105401 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G063600
[exp]
0 / 1 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.007G105401.2 pacid=42765091 polypeptide=Potri.007G105401.2.p locus=Potri.007G105401 ID=Potri.007G105401.2.v4.1 annot-version=v4.1
ATGGGTGCAGGTAAGGCGCCCATTTCCAATCAACTCCTCCCTTCACAACCACCACCACCACCAACTCCAAACGCAAGAGCAACCAGTAGGCGCCTTCTCC
TATTCTCCCTCCCTTTATTCACCACAGCAACTACTGCTAATCTTCTTCCTTTTAGTACTACAGGTGCTAAATTTGCGAGTGCTTCAACTATACAACTGAA
CTTAAACTCTTGTTGGGCACTAGCAGAAAGCTTTGACCCAGTAAGCCAAGCTGAGAAAGAAGCCAGTGCTGCCATATCTAGGAGAGTAACAGAAGCTGTA
GAGTTGTTGGAGAAGGGAGGGAATTGCAGGCTCAAGGTGACTTCAATGAAGCACTGCTCTACTTCACTAAGATGGTTGAAAATTACAAAGATTTTGCGTT
CTCAGAATATGGAAGGTTTGGGAGAGCATTGTCTCTTTACGAGGTTGGGGACAGAGAAGAAGCAATTGCAGAAATGGAAGATATCTCAATATCTTTGA
AA sequence
>Potri.007G105401.2 pacid=42765091 polypeptide=Potri.007G105401.2.p locus=Potri.007G105401 ID=Potri.007G105401.2.v4.1 annot-version=v4.1
MGAGKAPISNQLLPSQPPPPPTPNARATSRRLLLFSLPLFTTATTANLLPFSTTGAKFASASTIQLNLNSCWALAESFDPVSQAEKEASAAISRRVTEAV
ELLEKGGNCRLKVTSMKHCSTSLRWLKITKILRSQNMEGLGEHCLFTRLGTEKKQLQKWKISQYL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.007G105401
[exp]
0 1
AT4G14615 unknown protein Potri.008G160101
[exp]
12.08 0.8341
AT1G68660 Ribosomal protein L12/ ATP-dep... Potri.010G096600
[exp]
17.72 0.8311
AT5G51220 ubiquinol-cytochrome C chapero... Potri.003G151600
[exp]
25.39 0.8752
AT4G20330 Transcription initiation facto... Potri.001G107500
[exp]
67.34 0.8197
Potri.019G120200
[exp]
108.99 0.8416
AT3G23920 BAM1, BMY7, TR-... BETA-AMYLASE 7, beta-amylase 1... Potri.001G087600
[exp]
114.10 0.8531
AT4G25040 Uncharacterised protein family... Potri.012G104300
[exp]
114.74 0.8453
AT1G51560 Pyridoxamine 5'-phosphate oxid... Potri.010G252300
[exp]
143.72 0.8225
AT1G68540 TKPR2, CCRL6 tetraketide alpha-pyrone reduc... Potri.008G120200
[exp]
181.35 0.8349
AT3G10620 ATNUDX26 nudix hydrolase homolog 26 (.1... Potri.008G017900
[exp]
261.91 0.8206

Potri.007G105401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.