Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ORF.7
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19950 179 / 9e-54 unknown protein AT1G31130 167 / 4e-49 unknown protein AT5G44860 164 / 8e-48 unknown protein AT1G26650 56 / 1e-08 unknown protein AT1G69430 53 / 9e-08 unknown protein AT2G18680 45 / 5e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G105700 [exp] 435 / 5e-154 AT4G19950 182 / 4e-55 unknown protein Potri.005G186200 [exp] 319 / 2e-108 AT4G19950 185 / 3e-56 unknown protein Potri.002G074200 [exp] 242 / 6e-78 AT1G31130 128 / 3e-34 unknown protein Potri.005G184600 [exp] 206 / 4e-64 AT4G19950 133 / 3e-36 unknown protein Potri.015G125600 [exp] 171 / 8e-51 AT1G31130 327 / 7e-112 unknown protein Potri.012G125800 [exp] 156 / 5e-45 AT5G44860 396 / 4e-139 unknown protein Potri.010G163400 [exp] 59 / 2e-09 AT1G26650 453 / 1e-160 unknown protein Potri.008G091500 [exp] 59 / 2e-09 AT1G26650 401 / 3e-140 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018940 [exp] 262 / 1e-85 AT1G31130 231 / 8e-74 unknown protein Lus10028643 [exp] 251 / 2e-81 AT1G31130 228 / 1e-72 unknown protein Lus10018322 [exp] 176 / 2e-52 AT4G19950 417 / 3e-147 unknown protein Lus10017130 [exp] 162 / 4e-47 AT4G19950 410 / 1e-144 unknown protein Lus10036220 [exp] 86 / 1e-19 AT5G44860 265 / 3e-89 unknown protein Lus10038358 [exp] 67 / 9e-14 AT4G19950 183 / 1e-58 unknown protein Lus10036796 [exp] 60 / 6e-10 AT1G69430 434 / 4e-153 unknown protein Lus10037135 [exp] 59 / 1e-09 AT1G69430 431 / 8e-152 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.007G105600.1 pacid=42765486 polypeptide=Potri.007G105600.1.p locus=Potri.007G105600 ID=Potri.007G105600.1.v4.1 annot-version=v4.1 ATGGACAGAGAACAAGAGGAGCTCCAGTTTCTTGGGTTCTTTGGCATCTTCAAAGAATCCTTCAAGATCATCTTGACATGGAGAAAAATCTTCAGCAAGA TAACCCTAGCTCTCATCCTTCCACTATCCTTCATCTTCCTAGCTCATATGCAAATATCCCAAATGATTTTCTTCAAGATCCTTGACAATCAAGATACCTT AGACTTCACCCAATCTGGCACGCCAAAACATGATAAACTCTCTGATACCATCTCCGCGGAATGGACTGCCTTCTGGCTCTTCAAGTTTGCATACTTCACT TTCCTTCTAATCTTTTCCCTTCTTTCCACATCTGCAGTTGTTTATACCATAGCTTGCATATACACTGCCAAGCCAATCACCTTCAAGAAGATCATGAGTG TTGTGCCAAAGGTCTGGAAGAGACTCATGGTCACCTTTATATGGAGTTTTGCTGTTGTTGTGCTCTATAACATTGTTTCCATAGTGGTTTTGATCATTTT GTCTTTTACACTTATCAACCATGTACCTGCAGCTGGCTTCAGGATCTTGTTTCTCGTTGTTCTTGTTATCTTATATTCTGCGGGGTTACTGTATATCACC ATAGTTTGGCATCTGGCGAGTGTGATTTCTGTTTTAGAAGACTTTTATGGGATTAAAGCCATGATGAAGAGCAGGGAATTGATAAAAGGCAAGATGGGAA TTGCAGTTGCTATTTTTATTGTGGTTGGAATATGTTTTGTCGGAATTCAATTCCTGTTCGAGACTTTTGTGGTTCTTGAGTGGACAATGGAAATCAGAAT TGGAATGGGATTACTTTGCTTGTTATTGCTGTTTAAGGTGATTCTCTTCGGCCTTGTCATCCAAACAGTTCTCTACTTTGTCTGCAAATCCTATCACCAT GAGAATATTGACAAGTCCTCCTTGTCAGACCACCTTGAAGTTTATCTTGGGGAATATATCCCTCTCAAGTCCAAGGATGTCCAGATGGAGCAGTTTGAAG CCTAG
AA sequence Show only first row Show all	>Potri.007G105600.1 pacid=42765486 polypeptide=Potri.007G105600.1.p locus=Potri.007G105600 ID=Potri.007G105600.1.v4.1 annot-version=v4.1 MDREQEELQFLGFFGIFKESFKIILTWRKIFSKITLALILPLSFIFLAHMQISQMIFFKILDNQDTLDFTQSGTPKHDKLSDTISAEWTAFWLFKFAYFT FLLIFSLLSTSAVVYTIACIYTAKPITFKKIMSVVPKVWKRLMVTFIWSFAVVVLYNIVSIVVLIILSFTLINHVPAAGFRILFLVVLVILYSAGLLYIT IVWHLASVISVLEDFYGIKAMMKSRELIKGKMGIAVAIFIVVGICFVGIQFLFETFVVLEWTMEIRIGMGLLCLLLLFKVILFGLVIQTVLYFVCKSYHH ENIDKSSLSDHLEVYLGEYIPLKSKDVQMEQFEA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G19950			unknown protein		Potri.007G105600 [exp]	0	1	Pt-ORF.7
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Potri.011G152500 [exp]	1.73	0.8181
					Potri.001G131500 [exp]	6.32	0.8117
AT5G51720			2 iron, 2 sulfur cluster bindi...		Potri.015G132500 [exp]	6.92	0.8050
AT3G14750			unknown protein		Potri.001G382700 [exp]	7.07	0.7726
AT5G01650			Tautomerase/MIF superfamily pr...		Potri.016G126700 [exp]	8.48	0.7988
AT5G53160		RCAR3, PYL8	PYR1-like 8, regulatory compon...		Potri.012G000800 [exp]	11.48	0.7735
AT3G04500			RNA-binding (RRM/RBD/RNP motif...		Potri.019G018900 [exp]	13.82	0.8447
AT3G24130			Pectin lyase-like superfamily ...		Potri.017G054700 [exp]	21.81	0.8207
AT3G28970		AAR3	antiauxin-resistant 3, Domain ...		Potri.004G122100 [exp]	24.67	0.7744
AT5G41990		EIP1, ATWNK8, W...	EMF1-Interacting Protein 1, wi...		Potri.001G085500 [exp]	25.25	0.7664	WNK8.2

Compare expression of checked genes

Potri.007G105600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.