Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60560 1192 / 0 SWIM zinc finger family protein (.1.2) AT4G13970 592 / 0 zinc ion binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G245800 [exp] 654 / 0 AT1G60560 649 / 0.0 SWIM zinc finger family protein (.1.2) Potri.014G054600 [exp] 620 / 0 AT4G13970 1033 / 0.0 zinc ion binding (.1) Potri.002G140800 [exp] 588 / 0 AT4G13970 940 / 0.0 zinc ion binding (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035898 [exp] 1172 / 0 AT1G60560 1123 / 0.0 SWIM zinc finger family protein (.1.2) Lus10025765 [exp] 1155 / 0 AT1G60560 1112 / 0.0 SWIM zinc finger family protein (.1.2) Lus10003970 [exp] 576 / 0 AT4G13970 964 / 0.0 zinc ion binding (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.007G106000.1 pacid=42766468 polypeptide=Potri.007G106000.1.p locus=Potri.007G106000 ID=Potri.007G106000.1.v4.1 annot-version=v4.1 ATGTTGGCGGTAAATACAAGAGCATCAGAAGCAGTTGTTGATGCAAGAGAGATGGATATAGTTGAATCTGTACTCAATCTTGCTGTCCAAAATCCTGCCG AGGAGGATTTTTCGGCTGCCGATTTGACCTGGACTAAGTTTGGTACTGCTGAGCATCACGATGAGGTTGCCCTCATTCCTTACGACCGTGTTGATGCCTT TATAATTGGAGAATGCTCTAATCCCGAGTGCCCTACCCGCTTCCATATCGAGAGGGGAAGAAAACGAGCCAGAGGCACTTTGAAGGACTACAAGACTGAT GAATATTTGGAATACAAGTTGTACTGGTGTTCATTTGGTCCTGAAAATTATGGTGAAGGTGGAGGAGTATTACCTAGTCGAAAATATCGTCTTAATACCC GAAATCGTGCTGCAAGGCCCCAATCCATGCGTGGCTGTACATGCCACTTTGTAGTGAAGCGCTTGTATGCCCGACCGTCACAGGCGCTAATTATATACAA TGAAAGGCGTCATGTAAACAAATCTGGTTTTGTCTGCCACGGACCACTTGACAGAGATGCCATTGGTCCTGGAGCCAAAAAAATTCCATATATTTGTAAT GAAATTCAGCAGCAAACAATGTCTATGATTTATCTTGGAATTCCTGAGGAGAATGTGTTGGAGAAACACATTGAGGGGATTCAACGATACTGCGGTTCAA ATCCAAAAGTCAACAGCCTTGCTTCACAATATGTCCATAAACTTGGAATGATCATCAAACGGTCTACTCATGAGTTGGATCTAGATGATCAAGCTAGCAT CAGGATGTGGGTTGAACGCAATAAGAAATCCATTTTCTTTTATCAAGATTCTTTGGAATCAGATGCTTTCATTCTGGGAATTCAAACAGAATGGCAATTG CAGCAAATGATCCGTTTTGGTCACCGCAGTCTCATTGCAGCAGATTCAACATTTGGCATTAAGAGACTCAAGTATCCGTTGTGCACACTTCTTGTTTTTG ATTCAAGACAACATGCACTTCCTGTTGCATGGATCATCACGCGTAGCTCTGCAAAGCCAGATGTTGCTAAGTGGATGAAGGCTCTACTTGGTCGAGCATC AAGTGTGGAGCCTGGATGGAAGATCAGTGGATTCTTGATTGATGATGCTGCTGCAGAAATTGATCCCATAAGGGATATATTTGGCTGTCCTGTATTGTTT TCCCTCTGGCGAGTTCGTAGATCATGGCTGAGAAATATTGTCAAAAAGTGTGGTAACATTGAAGTTCAGCGAGAGATTTTCAAACGTCTGGGAGAGATAG TTTACAGCATTTGGGGTGGAGTCGATACTTTGTCTGCCTTGGAAGAGTTGACTCATGATCTTGTTGATCAGACTGCATTCATACAATATTTCAAAGCCTC TTGGGTGCCTAAGATTGAAATGTGGTTATCGACTATGAGAGCTCTTCCCCTAGCAAGTCAAGAGGCTTCAGGTGCCATAGAAGCTTATCATGTAAAGCTG AAAGCTAAATTGTTTGATGATTCACATCTTGGTGCACTCCAAAGGGTGGATTGGTTAGTGCACAAGCTGACAACTGAGTTGCATTCAAGTTACTGGCTGG ATAGGTACGCTGATGAAAGTGATTCTTTTCAAAATGTCAAGGAGGAATATATTGCATCTACATCATGGCACAGGGCTCTGCAAATTCCCAATTCTTCTGT TACTGTGGATGATAAGGATCATCTCTTTGCCAAGGTATCAAGTCAAAAGGACAACAACGTAACACGGATAGTGTGGAATCCCGGATCAGAATTTGCTTTT TGTGATTGTGCATGGTCATTGCAGGGAAACCTTTGCAAGCATGTTATCAAGGTCAATATGATTTGTGAAAACCGTGAAGGTTATCAACCCTCAATGTCAT TTCGGGCTTTCAAGGAGCTATTGACAAGCCTCTGGAAAAAACCAATGGATGACTCGGTTGGTCTAGATTTGTCTATTGCCTGGGCGCACCAGATGCTGGA TCAAATTAAACATCTTGTTGAACTGGATAGTTCAAAAACTATTGGTACTGTGGTAAATAACATGCCATTGAAATGGGTTTCAAAGAAGGGAAGAACATCT ATTGGCATTCCATCATCAGTTCTGGCTCTTCCATCCAGTTCCAAGAGTGGTTCAAACAATGCTGTTGCACGTAAGAAAAGTCAAAAACGTAAAAGATTGT CAAGATTGAGGTAG
AA sequence Show only first row Show all	>Potri.007G106000.1 pacid=42766468 polypeptide=Potri.007G106000.1.p locus=Potri.007G106000 ID=Potri.007G106000.1.v4.1 annot-version=v4.1 MLAVNTRASEAVVDAREMDIVESVLNLAVQNPAEEDFSAADLTWTKFGTAEHHDEVALIPYDRVDAFIIGECSNPECPTRFHIERGRKRARGTLKDYKTD EYLEYKLYWCSFGPENYGEGGGVLPSRKYRLNTRNRAARPQSMRGCTCHFVVKRLYARPSQALIIYNERRHVNKSGFVCHGPLDRDAIGPGAKKIPYICN EIQQQTMSMIYLGIPEENVLEKHIEGIQRYCGSNPKVNSLASQYVHKLGMIIKRSTHELDLDDQASIRMWVERNKKSIFFYQDSLESDAFILGIQTEWQL QQMIRFGHRSLIAADSTFGIKRLKYPLCTLLVFDSRQHALPVAWIITRSSAKPDVAKWMKALLGRASSVEPGWKISGFLIDDAAAEIDPIRDIFGCPVLF SLWRVRRSWLRNIVKKCGNIEVQREIFKRLGEIVYSIWGGVDTLSALEELTHDLVDQTAFIQYFKASWVPKIEMWLSTMRALPLASQEASGAIEAYHVKL KAKLFDDSHLGALQRVDWLVHKLTTELHSSYWLDRYADESDSFQNVKEEYIASTSWHRALQIPNSSVTVDDKDHLFAKVSSQKDNNVTRIVWNPGSEFAF CDCAWSLQGNLCKHVIKVNMICENREGYQPSMSFRAFKELLTSLWKKPMDDSVGLDLSIAWAHQMLDQIKHLVELDSSKTIGTVVNNMPLKWVSKKGRTS IGIPSSVLALPSSSKSGSNNAVARKKSQKRKRLSRLR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G60560			SWIM zinc finger family protei...		Potri.007G106000 [exp]	0	1
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Potri.017G128300 [exp]	7.48	0.8060
AT5G57740		XBAT32	XB3 ortholog 2 in Arabidopsis ...		Potri.006G176600 [exp]	12.80	0.7707
AT1G27595			unknown protein		Potri.002G107400 [exp]	32.31	0.7566
AT3G58060			Cation efflux family protein (...		Potri.001G010200 [exp]	35.32	0.7152
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Potri.003G095000 [exp]	36.12	0.7259	Pt-ATHSFA1.1
AT3G14010		CID4	CTC-interacting domain 4 (.1.2...		Potri.001G171100 [exp]	38.80	0.7471
AT2G46900			unknown protein		Potri.002G183500 [exp]	39.24	0.7265
AT1G27070			5'-AMP-activated protein kinas...		Potri.010G034600 [exp]	43.12	0.6884
AT1G50410			SNF2 domain-containing protein...		Potri.007G000700 [exp]	43.26	0.7419
AT5G08500			Transmembrane CLPTM1 family pr...		Potri.004G134500 [exp]	44.78	0.7066

Compare expression of checked genes

Potri.007G106000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.