Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33450 207 / 3e-66 MYB ATMYB69 myb domain protein 69 (.1) AT1G17950 190 / 9e-60 MYB AtMYB52, BW52, MYB52 myb domain protein 52 (.1) AT1G69560 186 / 5e-57 MYB LOF2, ATMYB105 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) AT5G17800 185 / 1e-56 MYB ATMYB56 myb domain protein 56 (.1) AT1G26780 182 / 3e-56 MYB LOF1, ATMYB117 LATERAL ORGAN FUSION 1, myb domain protein 117 (.1.2) AT1G73410 179 / 3e-55 MYB AtMYB54, BW54, MYB54 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 54, myb domain protein 54 (.1) AT3G29020 172 / 1e-52 MYB ATMYB110 myb domain protein 110 (.1.2) AT5G39700 135 / 5e-39 MYB ATMYB89 myb domain protein 89 (.1) AT5G67300 133 / 4e-37 MYB ATMYB44, AtMYBr1 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 44, myb domain protein r1 (.1) AT3G09230 131 / 2e-35 MYB ATMYB1 myb domain protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G063200 [exp] 366 / 2e-126 AT4G33450 190 / 9e-58 myb domain protein 69 (.1) Potri.015G033600 [exp] 194 / 2e-61 AT1G17950 254 / 1e-85 myb domain protein 52 (.1) Potri.012G039400 [exp] 194 / 3e-61 AT1G17950 267 / 1e-90 myb domain protein 52 (.1) Potri.005G186400 [exp] 193 / 1e-59 AT1G17950 197 / 1e-61 myb domain protein 52 (.1) Potri.017G017600 [exp] 188 / 5e-59 AT1G17950 243 / 3e-81 myb domain protein 52 (.1) Potri.002G073500 [exp] 189 / 5e-58 AT1G17950 202 / 9e-64 myb domain protein 52 (.1) Potri.017G085200 [exp] 191 / 1e-57 AT1G69560 215 / 2e-66 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Potri.007G134500 [exp] 184 / 3e-57 AT1G17950 246 / 5e-82 myb domain protein 52 (.1) Potri.008G088000 [exp] 187 / 3e-56 AT1G69560 229 / 2e-71 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018936 [exp] 190 / 5e-59 AT1G69560 206 / 6e-65 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Lus10029746 [exp] 189 / 2e-58 AT1G17950 199 / 1e-62 myb domain protein 52 (.1) Lus10028638 [exp] 188 / 3e-58 AT1G17950 206 / 7e-66 myb domain protein 52 (.1) Lus10031326 [exp] 189 / 5e-58 AT1G17950 219 / 3e-70 myb domain protein 52 (.1) Lus10031900 [exp] 189 / 5e-58 AT1G17950 220 / 2e-70 myb domain protein 52 (.1) Lus10030452 [exp] 190 / 6e-58 AT1G69560 240 / 6e-77 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Lus10026611 [exp] 189 / 1e-57 AT1G69560 238 / 5e-76 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Lus10005683 [exp] 177 / 9e-54 AT5G17800 212 / 1e-66 myb domain protein 56 (.1) Lus10007503 [exp] 140 / 3e-40 AT4G37260 182 / 2e-56 myb domain protein 73 (.1) Lus10040239 [exp] 144 / 6e-40 AT3G55730 315 / 1e-104 myb domain protein 109 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF13921 [poplar] [flax] Myb_DNA-bind_6 Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.007G106100.3 pacid=42765330 polypeptide=Potri.007G106100.3.p locus=Potri.007G106100 ID=Potri.007G106100.3.v4.1 annot-version=v4.1 ATGGAAGATCTTAAAGGTAGCTCAAGCAGTGATGATGGGAAGACTAGTTGTCATAGAGGGCACTGGAGACCAGCTGAAGATGAGAAACTTCGGCAACTTG TCGATCAATATGGTCCTCAGAATTGGAATTTCATCGCGGAACATCTTCAAGGAAGATCAGGGAAAAGTTGTAGATTGAGATGGTACAACCAACTTGATCC AAATATCAACAAAAGGCCTTTTACAGAAGATGAGGAAGAAAGGCTCCTAAAAGCTCATCAGATTCATGGAAACAGATGGGCTTCGATATCTAGGCTCTTT CCTGGTAGAACTGACAACGCTGTCAAGAATCATTACCATGTTGTTATGGCAAGAAGGAAGCGGGAACGCTGCTTGACTTTCCATGGTAAGAGAAATAATT TCCAAGTCCAATATTCTACTGATCATCATCTTCGGTCCAACAGAAATAGCAGTACTCCTCCTGGTAGCAATTTTGGGTTCTTTAGGCCTCAAGTGTCACT TGATTATGGTTCTAAATTAGGGTTTCAGAATAATATTATTGAAAGAAAGGGTACTAACATACCCATGACCTCTTCAAACTCATCACCCTCTTGGACTAAC GTTAGTGCTTCAACCATCACAAATGACTCATTAAGTTTTGACGTCTTTGATGCAAAAAGAAAGGATTATATTCAATACTCAAGTTCTAATTCTTCATTAC ATCCTAAAGAGAGACCACTTGCTTTGAATGAATCTCTTCACTGTACTTACCATCCTAGTTCTACCATTTATGTGGTAACAACTACCAGAATGTTGTTGGA CAGCAGATCCCTAATGCTAAGAAAGTTGATCCTAATAATCCTTTTGCATTGA
AA sequence Show only first row Show all	>Potri.007G106100.3 pacid=42765330 polypeptide=Potri.007G106100.3.p locus=Potri.007G106100 ID=Potri.007G106100.3.v4.1 annot-version=v4.1 MEDLKGSSSSDDGKTSCHRGHWRPAEDEKLRQLVDQYGPQNWNFIAEHLQGRSGKSCRLRWYNQLDPNINKRPFTEDEEERLLKAHQIHGNRWASISRLF PGRTDNAVKNHYHVVMARRKRERCLTFHGKRNNFQVQYSTDHHLRSNRNSSTPPGSNFGFFRPQVSLDYGSKLGFQNNIIERKGTNIPMTSSNSSPSWTN VSASTITNDSLSFDVFDAKRKDYIQYSSSNSSLHPKERPLALNESLHCTYHPSSTIYVVTTTRMLLDSRSLMLRKLILIILLH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33450	MYB	ATMYB69	myb domain protein 69 (.1)		Potri.007G106100 [exp]	0	1
AT3G04810		ATNEK2	NIMA-related kinase 2 (.1.2)		Potri.002G049400 [exp]	2.82	0.8979
AT3G49260		IQD21	IQ-domain 21 (.1.2.3)		Potri.012G016200 [exp]	3.00	0.9227
AT5G59350			unknown protein		Potri.008G054400 [exp]	4.89	0.8903
AT4G33450	MYB	ATMYB69	myb domain protein 69 (.1)		Potri.005G063200 [exp]	5.09	0.8638
AT4G01850		AtSAM2, SAM-2, ...	S-adenosylmethionine synthetas...		Potri.014G114700 [exp]	6.78	0.9001	Pt-SAM1.1
AT3G16630		ATKINESIN-13A, ...	P-loop containing nucleoside t...		Potri.008G221400 [exp]	7.34	0.8860
AT3G03550			RING/U-box superfamily protein...		Potri.013G073500 [exp]	7.54	0.8988
AT5G57200			ENTH/ANTH/VHS superfamily prot...		Potri.018G142800 [exp]	9.79	0.8445
AT1G08760			Plant protein of unknown funct...		Potri.017G026200 [exp]	10.95	0.8772
AT1G27920		MAP65-8	microtubule-associated protein...		Potri.003G173300 [exp]	11.53	0.8881

Compare expression of checked genes

Potri.007G106100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.