Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20015 575 / 0 Eukaryotic aspartyl protease family protein (.1) AT1G25510 370 / 1e-123 Eukaryotic aspartyl protease family protein (.1) AT3G18490 361 / 7e-120 Eukaryotic aspartyl protease family protein (.1) AT1G01300 343 / 4e-113 Eukaryotic aspartyl protease family protein (.1) AT3G61820 325 / 3e-106 Eukaryotic aspartyl protease family protein (.1) AT5G10760 234 / 3e-71 Eukaryotic aspartyl protease family protein (.1) AT5G10770 226 / 4e-68 Eukaryotic aspartyl protease family protein (.1) AT2G03200 209 / 8e-62 Eukaryotic aspartyl protease family protein (.1) AT5G33340 203 / 7e-60 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) AT1G79720 203 / 3e-59 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G063000 [exp] 798 / 0 AT3G20015 560 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.015G051800 [exp] 371 / 7e-124 AT3G18490 585 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.010G128200 [exp] 363 / 5e-121 AT1G25510 622 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 352 / 2e-116 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 343 / 4e-113 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 233 / 5e-71 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.006G232600 [exp] 228 / 5e-69 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 221 / 2e-66 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.018G014900 [exp] 219 / 2e-65 AT5G10770 408 / 3e-139 Eukaryotic aspartyl protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017362 [exp] 488 / 1e-169 AT3G20015 549 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10010157 [exp] 482 / 2e-167 AT3G20015 545 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10003999 [exp] 350 / 7e-116 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10042978 [exp] 296 / 1e-94 AT3G18490 504 / 3e-176 Eukaryotic aspartyl protease family protein (.1) Lus10030246 [exp] 257 / 6e-81 AT1G01300 472 / 3e-165 Eukaryotic aspartyl protease family protein (.1) Lus10035961 [exp] 234 / 3e-71 AT2G03200 525 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10025702 [exp] 236 / 5e-70 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041621 [exp] 219 / 5e-65 AT1G79720 510 / 1e-178 Eukaryotic aspartyl protease family protein (.1) Lus10041151 [exp] 211 / 8e-63 AT5G33340 445 / 1e-154 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10042426 [exp] 211 / 2e-62 AT5G10770 553 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF00026 [poplar] [flax] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Potri.007G106300.1 pacid=42766661 polypeptide=Potri.007G106300.1.p locus=Potri.007G106300 ID=Potri.007G106300.1.v4.1 annot-version=v4.1 ATGCCAGCCTCTCAAGCACTACTTGTCTTGGTGGTGGTAATGTTATTACAGCTTGCAATAAGCACCACCACCACCAAAACCTCCACCAACACCTCTACCG CTACCACTCATCATGACAACATTTCCAAAGCCAAAACCAAAACCACTTTATACCCTGATTTTCAACTCTTGAACGTGAAACAAGCATTAACAGAAACAAA AACTAGGCCCATAAAACCATCCCAGTATCAAGAACTATTCAAGACCAATCCAAATGATAGCGAAAGTGGGGGAAAGCAGAAACTAAAACTTGTCCACAGA GACAAGGTATCTTTCAGCAACAAGTTACATAACCATAGCCACGTTTTTCATGCACGCATGCATAGAGACGTGAAGAGGGTGGCTAGCCTTATACACCGCC TTTCAAGTGGCAGCGCCGCCAAGTATGAGGTAGAAGATTTTGGGTCAGATGTGGTGTCAGGCATGAACCAAGGTAGTGGAGAATATTTTGTTAGGATAGG ACTTGGTAGTCCGCCGAGAAGTCAATACATGGTTATTGATTCGGGCAGTGATATTGTTTGGGTTCAATGTAAACCCTGCACCCAATGTTATCATCAAACC GACCCGCTATTTGACCCGGCAGACTCAGCATCATTTATGGGGGTGTCTTGTAGCTCGGCAGTTTGTGACCGGGTGGAGAATGCGGGTTGTAATTCGGGTC GGTGTCGCTACGAGGTATCATATGGTGATGGATCGTATACAAAAGGGACTCTTGCCCTCGAAACACTTACATTTGGACGAACCGTGGTTCGAAATGTGGC TATCGGATGCGGGCATAGTAATCGGGGCATGTTTGTTGGTGCTGCCGGCTTATTGGGACTTGGAGGTGGATCCATGTCATTTATGGGTCAATTGAGTGGT CAGACCGGGAATGCATTTAGTTATTGTTTAGTGAGCAGGGGGACTAATACAAATGGATTTTTGGAATTCGGGTCTGAAGCAATGCCCGTGGGAGCTGCAT GGATCCCTTTGGTTCGAAACCCGCGGGCACCGAGCTTTTACTATATCAGACTTTTGGGTCTCGGAGTTGGAGACACGAGGGTGCCTGTATCTGAAGATGT ATTCCAATTAAATGAACTGGGAAGTGGAGGTGTTGTTATGGACACTGGGACGGCTGTGACTCGGTTCCCTACGGTGGCTTACGAAGCGTTTCGTAATGCC TTTATTGAGCAAACCCAAAACCTCCCCCGGGCTTCTGGAGTATCCATATTTGATACTTGTTATAACCTATTCGGGTTTCTGTCAGTTCGGGTACCGACTG TTTCATTTTACTTCTCAGGCGGGCCAATCCTAACCATTCCAGCAAATAACTTCTTAATTCCAGTGGATGATGCAGGAACCTTTTGTTTTGCATTTGCTCC TTCCCCATCAGGGCTTTCCATCCTCGGAAACATTCAACAAGAAGGGATTCAAATTTCTGTTGACGAAGCTAATGAATTCGTAGGCTTTGGCCCGAATATT TGCTGA
AA sequence Show only first row Show all	>Potri.007G106300.1 pacid=42766661 polypeptide=Potri.007G106300.1.p locus=Potri.007G106300 ID=Potri.007G106300.1.v4.1 annot-version=v4.1 MPASQALLVLVVVMLLQLAISTTTTKTSTNTSTATTHHDNISKAKTKTTLYPDFQLLNVKQALTETKTRPIKPSQYQELFKTNPNDSESGGKQKLKLVHR DKVSFSNKLHNHSHVFHARMHRDVKRVASLIHRLSSGSAAKYEVEDFGSDVVSGMNQGSGEYFVRIGLGSPPRSQYMVIDSGSDIVWVQCKPCTQCYHQT DPLFDPADSASFMGVSCSSAVCDRVENAGCNSGRCRYEVSYGDGSYTKGTLALETLTFGRTVVRNVAIGCGHSNRGMFVGAAGLLGLGGGSMSFMGQLSG QTGNAFSYCLVSRGTNTNGFLEFGSEAMPVGAAWIPLVRNPRAPSFYYIRLLGLGVGDTRVPVSEDVFQLNELGSGGVVMDTGTAVTRFPTVAYEAFRNA FIEQTQNLPRASGVSIFDTCYNLFGFLSVRVPTVSFYFSGGPILTIPANNFLIPVDDAGTFCFAFAPSPSGLSILGNIQQEGIQISVDEANEFVGFGPNI C

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20015			Eukaryotic aspartyl protease f...		Potri.007G106300 [exp]	0	1
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Potri.002G026300 [exp]	4.12	0.8968
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Potri.002G025800 [exp]	9.64	0.8839	CYP83F2
AT4G34880			Amidase family protein (.1)		Potri.009G130400 [exp]	10.04	0.7978
AT2G38870			Serine protease inhibitor, pot...		Potri.016G079050 [exp]	13.07	0.8734
AT1G24430			HXXXD-type acyl-transferase fa...		Potri.010G054002 [exp]	14.56	0.8882
AT5G10970	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.006G261700 [exp]	15.49	0.8829
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Potri.002G025500 [exp]	16.91	0.8661
AT3G48310		CYP71A22	"cytochrome P450, family 71, s...		Potri.012G089600 [exp]	22.44	0.8809
AT3G22060			Receptor-like protein kinase-r...		Potri.017G040049 [exp]	22.58	0.8614
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Potri.002G026500 [exp]	23.74	0.8651

Compare expression of checked genes

Potri.007G106300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.