Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19025 572 / 0 DNA repair metallo-beta-lactamase family protein (.1) AT1G27410 102 / 4e-23 DNA repair metallo-beta-lactamase family protein (.1) AT2G45700 82 / 5e-16 sterile alpha motif (SAM) domain-containing protein (.1) AT1G66730 74 / 2e-13 AtLIG6 DNA LIGASE 6 (.1) AT3G26680 59 / 6e-09 SNM1, ATSNM1 SENSITIVE TO NITROGEN MUSTARD 1, DNA repair metallo-beta-lactamase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G121700 [exp] 73 / 3e-14 AT1G27410 315 / 3e-107 DNA repair metallo-beta-lactamase family protein (.1) Potri.006G218300 [exp] 74 / 1e-13 AT2G45700 732 / 0.0 sterile alpha motif (SAM) domain-containing protein (.1) Potri.004G094200 [exp] 70 / 3e-12 AT1G66730 1656 / 0.0 DNA LIGASE 6 (.1) Potri.013G149650 [exp] 69 / 3e-12 AT1G27410 396 / 5e-137 DNA repair metallo-beta-lactamase family protein (.1) Potri.014G139600 [exp] 69 / 3e-12 AT3G26680 556 / 0.0 SENSITIVE TO NITROGEN MUSTARD 1, DNA repair metallo-beta-lactamase family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013876 [exp] 590 / 0 AT1G19025 478 / 7e-165 DNA repair metallo-beta-lactamase family protein (.1) Lus10038078 [exp] 68 / 1e-11 AT2G45700 767 / 0.0 sterile alpha motif (SAM) domain-containing protein (.1) Lus10017623 [exp] 65 / 2e-10 AT1G66730 1584 / 0.0 DNA LIGASE 6 (.1) Lus10033580 [exp] 64 / 2e-10 AT1G66730 456 / 1e-146 DNA LIGASE 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0398 [poplar] [flax] RMMBL_DRMBL PF07522 [poplar] [flax] DRMBL DNA repair metallo-beta-lactamase
Representative CDS sequence Show only first row Show all	>Potri.007G106700.1 pacid=42765384 polypeptide=Potri.007G106700.1.p locus=Potri.007G106700 ID=Potri.007G106700.1.v4.1 annot-version=v4.1 ATGCCAATAGAACTGCCAAGAGGACTACCGTTCTCTGTAGACACATGGAGTCCAAATTCTAAGAGAAAGAGACACCATTTCTTAACACATGCCCATAAAG ACCACACCTCTGGGATTTTAACACACTCTTGTTACCCAATTTACGCAACCCATCTCACGAAATTACTTGTTCTTCAAAATTACCCTCAGCTTGAGGGTTC ATTATTTGTCGGCATTGAAGTGGGAGAGTCAGTGGTTTTTAATGACCCAGATGGAGAATTCAAAGTCACGGCTTTTGATGCCAATCACTGTCCTGGAGCT GTAATGTTCTTGTTTGAAGGCAATTTTGGTAACATCCTGCACACAGGAGATTGCAGGCTTACCCCAGAGGGTGTAAGATGTTTACCAGAGAAGTATATCA GCAAGAAAGGGAAAGAACCTAGGTGCCAACTTGATTATGTTTTCTTAGATTGCACATTTGGAAAATTCACTCAGAAACTTCCTAGTAAGCATTCAGCAAT CCAACAGGTTCTTAATTGCATATGGAAGCACCCTGCTGCAACTGTTGTGTATCTGACCTGTGATCTTCTTGGTCAAGAGGATGTTTTGGCTGCTGTGTCT GAAACATTTGGTTCCAAGATATTTGTTGATGAGGTTGCCAACACAGAAAGTTTCCGAGCTTTGACACTTACAGTTCCTGAAATTCTCACTCAAGATCCAT CTTCCCGTTTCCATATGTTTGATGGATTTCCCAAGTTATACGAACGAGCAGCTAAAAAGATTGCTGAGGCCCAGGCTAATCTTCAACCTGAGCCCCTCAT TATCCGTCCTTCAGCACAATGGTATGCATGTGAGGAAGGATATTCTGAAACAGAAAGTCAAAGAAAACTGAGATTCAACGAAGCAGTTAGGGACCCAAAT GGTGTTTGGCATGTCTGTTATTCTATGCATTCCTCCAGGGGAGAATTGGAGTGGGCTTTGCAACTTCTTGTTCCTAAATGGGTCGTGTCAACAACCCCCA GTTGCTTGGCTATGGAGCTCGATTATGTTAAGAAGCATTGCTCTGGCACTAAACTAACTTTAGATGACCGTTTGTGGAAGCTTTTGGACATTAATGTTGA AGCATCATCAGAAACAGAAGTAACAGCCAGAGTCCTGGATTATCCTTCTGTGGTTGAACAGCCCATTCAAATTTCTGCACAATCTCAATCATCACCAGTT AAAGTAACTTCTAGACGACTTTTGAGTTTGTCTCCTCCAAGCAAAAGGCCGGAAGTGACTTTGTTTGGTAGAGCGAGACTTGGCATCCCAGATTCTGGTT TCCCTGCTGAGGAGAAAATTGAATCTATCAAAGATTCTTCACAAGTAGTTGCTCATAAAATGGATCAAGATGTCTCATTTGAAAATGAAGTCGAAGTGAA ATGTGAGAATATATTGGAGAGTAAGCTGGATACTGAATTGAAATGTGAGAATAAATTGGACACCACAAAACAATGCGGTGAGTCAGTCAAGAAAGAAGTT TTAAAGTTTTCTGTTCGTTCCCCCATTGGATCCTCACAGAATTTTAGTGAGACCTTGAGAAAGTTATACCGGTCAATGAATGTGCCTGTGCCTCGACCTC TTCCCTCCCTGTCTGAACTTATGAACTCCAAGAAAGGAACCAAGAGGAGATTTGAGTCTTAA
AA sequence Show only first row Show all	>Potri.007G106700.1 pacid=42765384 polypeptide=Potri.007G106700.1.p locus=Potri.007G106700 ID=Potri.007G106700.1.v4.1 annot-version=v4.1 MPIELPRGLPFSVDTWSPNSKRKRHHFLTHAHKDHTSGILTHSCYPIYATHLTKLLVLQNYPQLEGSLFVGIEVGESVVFNDPDGEFKVTAFDANHCPGA VMFLFEGNFGNILHTGDCRLTPEGVRCLPEKYISKKGKEPRCQLDYVFLDCTFGKFTQKLPSKHSAIQQVLNCIWKHPAATVVYLTCDLLGQEDVLAAVS ETFGSKIFVDEVANTESFRALTLTVPEILTQDPSSRFHMFDGFPKLYERAAKKIAEAQANLQPEPLIIRPSAQWYACEEGYSETESQRKLRFNEAVRDPN GVWHVCYSMHSSRGELEWALQLLVPKWVVSTTPSCLAMELDYVKKHCSGTKLTLDDRLWKLLDINVEASSETEVTARVLDYPSVVEQPIQISAQSQSSPV KVTSRRLLSLSPPSKRPEVTLFGRARLGIPDSGFPAEEKIESIKDSSQVVAHKMDQDVSFENEVEVKCENILESKLDTELKCENKLDTTKQCGESVKKEV LKFSVRSPIGSSQNFSETLRKLYRSMNVPVPRPLPSLSELMNSKKGTKRRFES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19025			DNA repair metallo-beta-lactam...		Potri.007G106700 [exp]	0	1
AT4G30470			NAD(P)-binding Rossmann-fold s...		Potri.006G178700 [exp]	5.09	0.7170
AT2G43210			Ubiquitin-like superfamily pro...		Potri.017G036600 [exp]	5.38	0.7258
AT4G24490		ATRGTA1	RAB geranylgeranyl transferase...		Potri.006G225100 [exp]	5.74	0.6829
AT5G49710			unknown protein		Potri.002G104200 [exp]	6.92	0.7170
AT3G13330		PA200	proteasome activating protein ...		Potri.001G470600 [exp]	7.74	0.7087
AT5G10770			Eukaryotic aspartyl protease f...		Potri.018G015100 [exp]	9.48	0.6290
AT1G22540			Major facilitator superfamily ...		Potri.013G107050 [exp]	9.79	0.7031
AT4G25433			peptidoglycan-binding LysM dom...		Potri.015G137500 [exp]	15.23	0.6346
AT1G48900			Signal recognition particle, S...		Potri.001G253500 [exp]	17.43	0.6935	SRP.4
AT5G57700			BNR/Asp-box repeat family prot...		Potri.018G097100 [exp]	22.44	0.6540

Compare expression of checked genes

Potri.007G106700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.