Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-MAP3.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53570 582 / 0 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT1G63700 415 / 2e-134 EMB71, MAPKKK4, YDA YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) AT5G66850 328 / 6e-103 MAPKKK5 mitogen-activated protein kinase kinase kinase 5 (.1) AT1G54960 295 / 2e-91 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1) AT1G09000 291 / 3e-89 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) AT3G06030 276 / 7e-84 AtANP3, MAPKKK12, ANP3 NPK1-related protein kinase 3 (.1) AT4G08500 266 / 1e-80 ARAKIN, ATMEKK1, MAPKKK8, MEKK1 MAPK/ERK kinase kinase 1 (.1) AT4G08470 245 / 4e-73 MEKK3, MAPKKK10 MAPK/ERK kinase kinase 3 (.1) AT4G08480 241 / 1e-69 MEKK2, MAPKKK9 MAPK/ERK KINASE KINASE 2, mitogen-activated protein kinase kinase kinase 9 (.1) AT4G12020 242 / 3e-68 WRKY MEKK4, MAPKKK11, ATWRKY19, WRKY19 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G062500 [exp] 884 / 0 AT1G53570 566 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.012G143900 [exp] 420 / 8e-136 AT1G63700 766 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.015G146700 [exp] 416 / 1e-134 AT1G63700 826 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.001G102900 [exp] 403 / 1e-129 AT1G63700 868 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.003G129000 [exp] 394 / 5e-126 AT1G63700 850 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.007G039800 [exp] 317 / 2e-99 AT5G66850 511 / 3e-173 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.005G135100 [exp] 315 / 6e-98 AT5G66850 589 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.014G035500 [exp] 305 / 1e-93 AT5G66850 453 / 4e-149 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.002G129100 [exp] 300 / 4e-92 AT5G66850 441 / 5e-145 mitogen-activated protein kinase kinase kinase 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002096 [exp] 643 / 0 AT2G13680 1077 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10000829 [exp] 600 / 0 AT1G53570 537 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Lus10024645 [exp] 409 / 7e-132 AT1G63700 905 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10027496 [exp] 409 / 8e-132 AT1G63700 855 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10032279 [exp] 408 / 1e-131 AT1G63700 904 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10014976 [exp] 397 / 3e-128 AT1G63700 704 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10038858 [exp] 375 / 7e-120 AT1G63700 668 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10039250 [exp] 377 / 8e-120 AT1G63700 818 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10009339 [exp] 316 / 4e-98 AT5G66850 568 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10019635 [exp] 315 / 4e-98 AT5G66850 561 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF14531 [poplar] [flax] Kinase-like Kinase-like
Representative CDS sequence Show only first row Show all	>Potri.007G106800.1 pacid=42765333 polypeptide=Potri.007G106800.1.p locus=Potri.007G106800 ID=Potri.007G106800.1.v4.1 annot-version=v4.1 ATGCCTGCTTGGTGGAGTAAAAGGAGCAGCAAGAGCAAAGAAGGGAGCAATCAAGAGAACTCACATGGAAAAAATGATAAAAAGATCTGTAGCATCACAG AAAACAAGAGGAAAAGTAGTCTTGATGAGGCGGCTTTGAGAAAGAATTCACCACGTGGCAGCAAGGAATTTGCTGGCAGTGGTGGATCATCCGGGTTTTC GGGTTTTGAGTCGGATGCAGCTGAAAAAAGAGGGCTTCCTTTGCCTGAACCATGTGTGAGTGATCTTGGTGCTGGTGGTGGGATTGGAGGTGCTGCTGGT GGAGTCGGGTTTGGACCCGGGTCGGGTTCTGTTTCAAGTGTTAGCTCTTCTGGGTCATCTGGTGTTGAAGATCATGATAATAATCAGGGTAGTAGTAGTC TGTTTGGTGGTTACAGGTTATCTGTTGATCATAGAGGACATGGTGGGGGTTCAAGAAGTCCTGTTCCTGGGTCGAGAAGTCCTGTTCCAGGGTCGAGAAC AACAAGCAGGCCTACTTCACCTCTCCATCCGCTGCTGGGTGGTATGAGCTTAGACTCCTTGACTGGGAGGCTGGAAGATGCGAAGAGCCAATGGCATCCA CTGCCTCTTCCACCAGGTTCTCCCACAAGCCCGCCTTCGTTACCGGGCACAAGAACCACTGGAGCAACAGACAACTCTACCTTGTCAAAATGGAAGAAAG GAAAGCTTCTAGGAAGGGGAACCTTTGGACATGTTTACCTCGGATTTAACAGCCGGAGTGGACAGATGTGCGCAATAAAAGAAGTCAAGGTTATTTCAGA TGATTCAACATCAAAAGAATGTCTCAAGCAACTAAAACAGGAGATAGATTTGCTTAGTCAGCTATCACATGCAAACATTGTTCGTTACTATGGAAGTGAA CTGAGTGAAGAAACACTTTCAGTTTATTTAGAGTATGTATCTGGTGGCTCAATTCACAAGTTACTTCAAGAGTATGGTGCCTTTACAGAGCCGGTTATTC AAAATTATACCAGGCAGATTCTCTCTGGGCTTGCATATTTGCATGGAAGAAATACAGTTCACAGGGATATCAAAGGAGCAAACATATTAGTGGATCCTAA TGGTGAAATCAAGTTGGTTGACTTTGGCATGGCTAAACATATTATGACATGCTCTTCAATGCTTTCATTCAAGGGAAGTCCTTACTGGATGGCACCTGAG GTGGTGATGAATACAAATGGCTACAGTCTTGCAGTAGATGTATGGAGTCTGGGATGTACAATTCTTGAAATGGCAACATCAAAACCACCATGGAGCCAGT ACGAAGGGGTTGCTGCAATCTTTAAAATTGGGAACAGCAAAGATATGCCAGATATTCCTGATTATATTTCCAATGATGCAAAAAGTTTCATAAAGCTATG CCTGCAACGAGATCCATTAGCACGCCCTACGGCCTCACAGTTGTTGGACCACCCTTTCATTCGGGACCAATCGACAACAAGAGTTGCGAACATCAACATT ACTAGGGATGCCTTTCCCAGAACTTTTGATGGAAGCCGCACACCGCCAGCCTTAGAGCTTCACTCCAACCGAACAAATGCCAATTCTTGTGATGGAGATT TTGCAATGAAGCCGGTGGTTAATAATATAAGAGCACTGAAGAATCCAAGGGATGATGGCAGAATGATCACATCTATGCCTGTATCTCCTTGTTCTAGCCC ACTGCGACAACATGGGCCTGCACACAGGAGTAGTTATCTTTCTCCTCCTCACCCTGCCTTTGCCATGATGGGACAAAGCAGTTACAATTTAAGTGACTTC TCATTATATCCAATAAGACAAGGTCCATACACCCACGACCTTTTCTTCGATACCCCTCCGTTGAAATTTCAAACACCGGGTACATCACCGAGAACAAGAC CCATCTGA
AA sequence Show only first row Show all	>Potri.007G106800.1 pacid=42765333 polypeptide=Potri.007G106800.1.p locus=Potri.007G106800 ID=Potri.007G106800.1.v4.1 annot-version=v4.1 MPAWWSKRSSKSKEGSNQENSHGKNDKKICSITENKRKSSLDEAALRKNSPRGSKEFAGSGGSSGFSGFESDAAEKRGLPLPEPCVSDLGAGGGIGGAAG GVGFGPGSGSVSSVSSSGSSGVEDHDNNQGSSSLFGGYRLSVDHRGHGGGSRSPVPGSRSPVPGSRTTSRPTSPLHPLLGGMSLDSLTGRLEDAKSQWHP LPLPPGSPTSPPSLPGTRTTGATDNSTLSKWKKGKLLGRGTFGHVYLGFNSRSGQMCAIKEVKVISDDSTSKECLKQLKQEIDLLSQLSHANIVRYYGSE LSEETLSVYLEYVSGGSIHKLLQEYGAFTEPVIQNYTRQILSGLAYLHGRNTVHRDIKGANILVDPNGEIKLVDFGMAKHIMTCSSMLSFKGSPYWMAPE VVMNTNGYSLAVDVWSLGCTILEMATSKPPWSQYEGVAAIFKIGNSKDMPDIPDYISNDAKSFIKLCLQRDPLARPTASQLLDHPFIRDQSTTRVANINI TRDAFPRTFDGSRTPPALELHSNRTNANSCDGDFAMKPVVNNIRALKNPRDDGRMITSMPVSPCSSPLRQHGPAHRSSYLSPPHPAFAMMGQSSYNLSDF SLYPIRQGPYTHDLFFDTPPLKFQTPGTSPRTRPI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53570		MAPKKK3, MAP3KA	MAP KINASE KINASE KINASE 3, mi...		Potri.007G106800 [exp]	0	1	Pt-MAP3.2
AT5G38600			Proline-rich spliceosome-assoc...		Potri.017G111300 [exp]	4.24	0.8493
AT5G52530			dentin sialophosphoprotein-rel...		Potri.017G142600 [exp]	6.16	0.8472
AT2G37840			Protein kinase superfamily pro...		Potri.016G104900 [exp]	7.87	0.7865
AT1G30460	C3HZnF	CPSF30, ATCPSF3...	ARABIDOPSIS THALIANA CLEAVAGE ...		Potri.001G357800 [exp]	15.87	0.8344
AT1G01930	C2H2ZnF		zinc finger protein-related (....		Potri.002G149800 [exp]	17.08	0.8385
AT5G13950			unknown protein		Potri.002G237800 [exp]	19.59	0.8390
AT2G02160	C3HZnF		CCCH-type zinc finger family p...		Potri.008G144200 [exp]	23.43	0.8280
AT3G09850			D111/G-patch domain-containing...		Potri.018G113600 [exp]	24.08	0.8065
AT1G73730	EIL	AtEIL3, ATSLIM,...	ARABIDOPSIS THALIANA SULFUR LI...		Potri.001G015900 [exp]	25.19	0.8345	Pt-EIL3.2
AT3G06670			binding (.1.2)		Potri.010G142200 [exp]	25.69	0.8271

Compare expression of checked genes

Potri.007G106800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.