Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09760 691 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G64640 665 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G27870 340 / 1e-107 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G05610 333 / 8e-106 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G45220 319 / 2e-102 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G06830 316 / 2e-100 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G49180 306 / 1e-96 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G26450 296 / 3e-92 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G53830 293 / 2e-91 ATPME2 pectin methylesterase 2 (.1) AT3G10720 293 / 5e-91 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G061500 [exp] 781 / 0 AT5G09760 717 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.011G025400 [exp] 327 / 5e-105 AT1G11580 638 / 0.0 methylesterase PCR A (.1) Potri.010G010464 [exp] 319 / 2e-101 AT5G27870 619 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.001G162400 [exp] 318 / 4e-101 AT3G14310 792 / 0.0 pectin methylesterase 3 (.1) Potri.015G127700 [exp] 314 / 4e-100 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.014G067100 [exp] 313 / 5e-100 AT2G45220 691 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126800 [exp] 311 / 3e-99 AT2G45220 637 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G109400 [exp] 308 / 7e-98 AT1G23200 579 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127500 [exp] 304 / 2e-96 AT2G45220 573 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005587 [exp] 683 / 0 AT5G09760 689 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10033486 [exp] 641 / 0 AT5G09760 597 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10020888 [exp] 362 / 2e-116 AT5G64630 563 / 0.0 FASCIATA 2, Transducin/WD40 repeat-like superfamily protein (.1.2.3) Lus10039314 [exp] 310 / 5e-98 AT3G14310 702 / 0.0 pectin methylesterase 3 (.1) Lus10039927 [exp] 306 / 5e-96 AT2G26450 598 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006103 [exp] 300 / 1e-95 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10013721 [exp] 291 / 1e-95 AT5G09760 278 / 3e-91 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10013344 [exp] 302 / 4e-95 AT3G14310 698 / 0.0 pectin methylesterase 3 (.1) Lus10020677 [exp] 299 / 4e-94 AT3G05620 681 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10029868 [exp] 298 / 1e-93 AT3G05620 684 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF01095 [poplar] [flax] Pectinesterase Pectinesterase CL0268 [poplar] [flax] PF04043 [poplar] [flax] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Potri.007G107300.5 pacid=42765264 polypeptide=Potri.007G107300.5.p locus=Potri.007G107300 ID=Potri.007G107300.5.v4.1 annot-version=v4.1 ATGGTAGAACCATCCTCACCAACAGGCTCAACAAAACCACTCAACAACTTTGGCCATAGACCACCATTTTCAAGCTCAAAATCCAAATGCTTTGTTATCA TCATTGCTATTGTCCTTCTGTTATCCCTTGTTTCTCTCATTCTCTTCTTTACCCTTTCTTCAAAGACCAACAAAGAACACCGATATTCACCGCAAACACA ACTCTTTCCATCTATACCAGCTCCTATAACAACAAGACAAACTCAGACTGATATCCATTTAGCCTGCAATGCGACGCAACATCCTCAAACATGCGAATCC TCTTTAGGAGAAGCCAATGTTGTCCCTCCTAACCCAACCCCACTTCAAGTCATCCAATCTGCGATCTTTGTCTCCTCTCAAAACCTCACAACTGCAAAGT CAATCCTAAACTCTCTCCTAGCATCAACTACCAACCCAAACATCACCACTGCTGCGAAAATTTGTTTAGAGGTACTGGGATATTCGCAGTACCGGATTTC ATCAGCCAACCAGAGCTTGACACGTGGAGAGATCAAGAATGCTCGCGCTTGGATGAGTGCGGGTCTTTCTTATCAAAATGATTGCTATGGAGGTCTGATT TACAACGCTGGTAATAGTACCTCAAAGCCGGTCAATGAAACATTGTTGTTCTTGGAGTCTTTGGTTGGTTTAACTAGCAATGCGTTAAGCATGACGGTGT CTTATGATTTGTTTGGAAATGAAACGGAATCGTGGAGACCTCCCCAAACCGAAAGGGACGGGTTCTGGGAGGATTCCGTGCTTGATAGTGTACGGGGGTT TTTCAGAGGTGGATTTCCATCAAAGTTAAAAGCAGATGCCACGGTGTGTAAGGATGAGAGTAAAGATAACGGATGCTACAAAACGGTGCAGGAGGCTGTT AATGCGGCACCAGATAACGCCATGGACCGGAGGTTTGTGATACATATCAAGGAAGGGGTTTACGAGGAGATTGTTAGGGTTCCGTTTGAGAAGAAAAATG TGGTCTTTTTGGGTGATGGGATGGGCAAGAGTGTCATTACCGGGTCGTTGAGTGTCGGTCAGATTGGAGTAACTACTTATGAGTCAGCTACAGTAGGAGT TCTTGGTGATGGATTTATGGCCAGTGGTCTAACAATCCAGAACACAGCAGGAGCCCCCACCCACCAAGCAGTAGCTTTCAGGTCGGATAGTGATTTGTCC ATTATAGAGAACTGTGAATTTCTGGGCAATCAAGACACTTTATATGCTCATTCACTCCGCCAATTTTACAAATCATGCCACATCGAGGGGAATGTGGACT TCATTTTCGGAAACTCAGCTGCAATTTTTCAAGATTGCCAGATATTAATCCGTCCAAGGCAAGAAAAGCCAGAAAAAGGCGAAAACAATGCCGTCACCGC ACATGGCAGGACAGACCCTGCCCAGTCAACAGGTTTCGTCTTTCAAAATTGTTTGATCAATGGAACTGAGGAATACATGGCACTTTATAGAAGCAAGCCT AGCGTGCACAAGAATTTCTTGGGAAGGCCATGGAAGGAATTCTCGAGGACTGTTTTTATACACTGTAACCTGGAAGCTCTTCTAACACCACAAGGGTGGA TGCCATGGAGTGGAGATTTTGCACTTAAAACACTTTATTATGGAGAATTTGAGAATTCTGGACCAGGATCTGACTCGTCTCAGAGAGTAACATGGAGTAG TCAAATTCCTGCAGAGCATGTAGCTACATATTCAGTACAGCATTTCATTCAAGGAGATGAGTGGATTCCAACATCTTCTTGA
AA sequence Show only first row Show all	>Potri.007G107300.5 pacid=42765264 polypeptide=Potri.007G107300.5.p locus=Potri.007G107300 ID=Potri.007G107300.5.v4.1 annot-version=v4.1 MVEPSSPTGSTKPLNNFGHRPPFSSSKSKCFVIIIAIVLLLSLVSLILFFTLSSKTNKEHRYSPQTQLFPSIPAPITTRQTQTDIHLACNATQHPQTCES SLGEANVVPPNPTPLQVIQSAIFVSSQNLTTAKSILNSLLASTTNPNITTAAKICLEVLGYSQYRISSANQSLTRGEIKNARAWMSAGLSYQNDCYGGLI YNAGNSTSKPVNETLLFLESLVGLTSNALSMTVSYDLFGNETESWRPPQTERDGFWEDSVLDSVRGFFRGGFPSKLKADATVCKDESKDNGCYKTVQEAV NAAPDNAMDRRFVIHIKEGVYEEIVRVPFEKKNVVFLGDGMGKSVITGSLSVGQIGVTTYESATVGVLGDGFMASGLTIQNTAGAPTHQAVAFRSDSDLS IIENCEFLGNQDTLYAHSLRQFYKSCHIEGNVDFIFGNSAAIFQDCQILIRPRQEKPEKGENNAVTAHGRTDPAQSTGFVFQNCLINGTEEYMALYRSKP SVHKNFLGRPWKEFSRTVFIHCNLEALLTPQGWMPWSGDFALKTLYYGEFENSGPGSDSSQRVTWSSQIPAEHVATYSVQHFIQGDEWIPTSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G09760			Plant invertase/pectin methyle...		Potri.007G107300 [exp]	0	1
AT4G24060	DOF	AtDof4,6	Dof-type zinc finger DNA-bindi...		Potri.003G144500 [exp]	5.19	0.6285
AT2G23520			Pyridoxal phosphate (PLP)-depe...		Potri.007G036100 [exp]	8.66	0.6101
AT2G28305		ATLOG1	LONELY GUY 1, Putative lysine ...		Potri.009G010800 [exp]	11.40	0.5537
AT1G21920			Histone H3 K4-specific methylt...		Potri.002G085900 [exp]	19.44	0.5684
AT5G14980			alpha/beta-Hydrolases superfam...		Potri.001G466700 [exp]	29.29	0.5400
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Potri.019G014409 [exp]	30.90	0.5961
AT5G49665			Zinc finger (C3HC4-type RING f...		Potri.002G107902 [exp]	32.40	0.5277
AT1G60590			Pectin lyase-like superfamily ...		Potri.010G042100 [exp]	39.76	0.5466
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Potri.010G221700 [exp]	40.29	0.5701
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Potri.016G123800 [exp]	51.08	0.5321

Compare expression of checked genes

Potri.007G107300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.