Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55750 645 / 0 BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) (.1) AT3G61420 622 / 0 BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G061432 [exp] 627 / 0 AT1G55750 383 / 2e-129 BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) (.1) Potri.005G061366 [exp] 367 / 5e-125 AT3G61420 233 / 9e-74 BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020465 [exp] 744 / 0 AT1G55750 607 / 0.0 BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) (.1) Lus10007089 [exp] 650 / 0 AT1G55750 546 / 0.0 BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03909 [poplar] [flax] BSD BSD domain CL0266 [poplar] [flax] PH PF08567 [poplar] [flax] PH_TFIIH TFIIH p62 subunit, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.007G107400.1 pacid=42765629 polypeptide=Potri.007G107400.1.p locus=Potri.007G107400 ID=Potri.007G107400.1.v4.1 annot-version=v4.1 ATGGCAAGCGGGCAAGTGTCAAAACGAGTCAAGTTTAAGAGTTCAGTGAAAGACCCTGGCACTCCTGGTCGATTATACCTGACTTTGGAGAGGTTGATGT TCAAACCTAATAGTCCTAATTCAGCTACAAAGCTTAATATGGAGTTTAGATTCGTTAAAAATCATAAGTACACTAAGGAGGGATCAAATAAAGCACCAAT GCTTAATCTCACTTCGAGTCAGGGTGTGAGTTACATATTTGAGTTTGAAAGTTATGATGATCTCCACGTTTGCAAAGAGTGTGTAGGCAAAGCCCTTTCG AAGACTGGAGAGACACCAAAGCCTATAGACACTTCAGAAGTTCCTTCTGAACAACCTAGCACAGAAGAATTGCTTTTGCGGATGAATATGCTGCAAGAAA ATAGTGAGTTGCAGAACCTTCATAAGCGGTTTGTGAGTGATGGTATCTTGACAGAAGCTGAATTTTGGGCAACTAGGAAGAAGTTGCTTGGTGGGAACTT CAGCAAAAAGTCAAAACAACGGACAGGCCTTAAAAGTTTCGTGCTTTCAGACACCAAGCCATCAACAGACGGTCGAACAAACAAAGTTACATTTACTTTG ACTCCTGAGATTGTTCGTGAGGTTTTTGCAGAGAAACCAGCAGTACACCGAGCATACTTGGATTTAGTTCCCAAAAAGATGTCAGAAAGGGATTTCTGGA GCAAATATTGTAGAGCAGAATACCTCCAGCATGCAAAAAATGCTAATGCTGCAGCTGCTGCTGCAGCAGAAGCTGCTGAAGATGAGGAGCTTGCTCTTTT CCTGAAACCTGATGATATTTTGGCTAGCGAAACTCGGCGGAAGATCAGATGTGTTGATCCAACTCTAAACATGGAAGCTGATGAAGGGGATGATTATACA CATCTTCCAGATCATGGGATTGTCCGTGATGGTAGCAAGGAAATAACTGAATCACAGCATGAACTATATATAAGAACTCTGTCACAGGAGCTAAACAGGC ATGCCGCTGTTGTTCTTCAAGGAACACCTATAGATGAGGAACAATTAAAAGACACTCAGACTGTAGCAGAGGCACTTAAACAGTCAAAACAGGGACAGAA TGCTTCAAATGAAGAAACTTATATGAATGCAAACCAGGACAGATTAAGTAGGATTTCAAAAATGATGGAAATTGATGATCTTCAGGCATCAAGTGATCTT CCTTTGGCACCACTTTCTATCAAGGATCCAAGGGACTACTTTGATTCTCAACAAGCTACTGCTCTTAAAAATTCAAGAGATACCAGTATTGGAACTGATC CAGTAAAACGCATCCTGAGTGCAGAAGAATCATATGCTTCTTTGAGGGACTCCATTTCCCTCATAAAAACCACTGGATTGGTCGATCCCATAATTAAACC AGAAGTTGCAGTAAAGGTTCTTTCAGTCTTGACCCACAATATCTCAAGCACCAAATATGATACTGGGAAGAATCATGGGCTAAGTGTTTTGGACACATTG CCAAATACAATTAAAGAGGAGCTGCTATATCACTGGACGTCTCTTCAGGAGTTATTGAAGCATTATTGGTCATCATATCCAATCACTACTACTTATCTTT ATACTAAGGTAAGCAGATTGAAGGATGCAATGTCAAAAATTGATTCACAGCTACAGGAGCTGAAGGAATCTGTGCAGTCAGATCTTCGACATCAGGTCAC TCTACTTCTTCGACCAATGCAACAGGCTCTCGAGGCAGCCATGCAACATTATGATGCCGAATTGCAGAAGAGATCAGCGCGCAGTGGAGATAGATCAAAT GGATATACCTAG
AA sequence Show only first row Show all	>Potri.007G107400.1 pacid=42765629 polypeptide=Potri.007G107400.1.p locus=Potri.007G107400 ID=Potri.007G107400.1.v4.1 annot-version=v4.1 MASGQVSKRVKFKSSVKDPGTPGRLYLTLERLMFKPNSPNSATKLNMEFRFVKNHKYTKEGSNKAPMLNLTSSQGVSYIFEFESYDDLHVCKECVGKALS KTGETPKPIDTSEVPSEQPSTEELLLRMNMLQENSELQNLHKRFVSDGILTEAEFWATRKKLLGGNFSKKSKQRTGLKSFVLSDTKPSTDGRTNKVTFTL TPEIVREVFAEKPAVHRAYLDLVPKKMSERDFWSKYCRAEYLQHAKNANAAAAAAAEAAEDEELALFLKPDDILASETRRKIRCVDPTLNMEADEGDDYT HLPDHGIVRDGSKEITESQHELYIRTLSQELNRHAAVVLQGTPIDEEQLKDTQTVAEALKQSKQGQNASNEETYMNANQDRLSRISKMMEIDDLQASSDL PLAPLSIKDPRDYFDSQQATALKNSRDTSIGTDPVKRILSAEESYASLRDSISLIKTTGLVDPIIKPEVAVKVLSVLTHNISSTKYDTGKNHGLSVLDTL PNTIKEELLYHWTSLQELLKHYWSSYPITTTYLYTKVSRLKDAMSKIDSQLQELKESVQSDLRHQVTLLLRPMQQALEAAMQHYDAELQKRSARSGDRSN GYT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55750			BSD domain (BTF2-like transcri...		Potri.007G107400 [exp]	0	1
AT1G19100			Histidine kinase-, DNA gyrase ...		Potri.012G089000 [exp]	2.23	0.8095
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.017G106500 [exp]	8.30	0.7773
AT2G39750			S-adenosyl-L-methionine-depend...		Potri.008G059500 [exp]	9.69	0.7824
AT1G22060			unknown protein		Potri.005G170066 [exp]	12.00	0.7699
					Potri.019G120050 [exp]	12.44	0.7694
AT3G03810		EDA30	embryo sac development arrest ...		Potri.019G036600 [exp]	14.69	0.7464
AT5G10020			Leucine-rich receptor-like pro...		Potri.005G083000 [exp]	14.73	0.7582
AT2G38420			Pentatricopeptide repeat (PPR)...		Potri.006G106400 [exp]	17.66	0.6928
AT1G05170			Galactosyltransferase family p...		Potri.004G013900 [exp]	24.00	0.7230
AT2G16370		THY-1	thymidylate synthase 1 (.1)		Potri.009G119200 [exp]	24.45	0.6958

Compare expression of checked genes

Potri.007G107400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.