Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18640 141 / 1e-34 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G26850 100 / 4e-23 histone-lysine N-methyltransferases (.1.2) AT2G33835 85 / 1e-16 C3HZnF FES1 FRIGIDA-ESSENTIAL 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT5G56930 49 / 2e-05 C3HZnF EMB1789 embryo defective 1789, CCCH-type zinc finger family protein (.1) AT3G47120 48 / 2e-05 C3HZnF RNA recognition motif (RRM)-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G061100 [exp] 1301 / 0 AT3G18640 140 / 2e-34 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.018G051900 [exp] 106 / 2e-23 AT3G26850 168 / 4e-47 histone-lysine N-methyltransferases (.1.2) Potri.011G056600 [exp] 104 / 8e-23 AT2G33835 151 / 2e-38 FRIGIDA-ESSENTIAL 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.006G227200 [exp] 94 / 3e-19 AT3G26850 158 / 2e-43 histone-lysine N-methyltransferases (.1.2) Potri.004G134400 [exp] 43 / 0.001 AT3G08505 326 / 2e-110 zinc finger (CCCH-type/C3HC4-type RING finger) family protein (.1), zinc finger (CCCH-type/C3HC4-type RING finger) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033487 [exp] 389 / 3e-122 AT3G18640 176 / 6e-46 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10020889 [exp] 298 / 1e-87 AT3G18640 167 / 6e-43 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10002082 [exp] 265 / 2e-76 AT3G26850 214 / 1e-59 histone-lysine N-methyltransferases (.1.2) Lus10003846 [exp] 231 / 7e-65 AT3G18640 192 / 4e-52 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10015319 [exp] 105 / 3e-23 AT2G33835 128 / 7e-31 FRIGIDA-ESSENTIAL 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10025447 [exp] 94 / 2e-19 AT2G33835 140 / 1e-34 FRIGIDA-ESSENTIAL 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.007G107800.5 pacid=42765267 polypeptide=Potri.007G107800.5.p locus=Potri.007G107800 ID=Potri.007G107800.5.v4.1 annot-version=v4.1 ATGAAAGAAGGTGGTGCTACTTCTGTCAGAATGAGTGGGAGTGGCCGAAAACGCAGTTCAAAATGGGATTTGAAAGAAGGGCCTCGAATGTCATTTGAAG ATGTGGAAGACAATACTTGGCCTGGGAAAGCAGGAATATCTTTTCGTGACAAAGAATCACGACGTGATTGGCTCCCACCTGAAGCTGCTGGTGGCACTCG CTCCAAGTGGTCAGCAATGGAACCGTTGCCTGGAAGAAGAAGCTCTCGCAGGGATGATAATATTGATGAAGACCGTAGCAGAACTTTGAAAGCCACTTAT GAAGATGAGAGTTATGGAACTAGAATGTCTCCTGGTCTCGATGAATGGAGACAGAAAAGTTTTCGAAACTCTCCCAAGAATGAATATAAAAGAACAAGAA GGAGCCAGAGCCGGAGCCGGAGCCGGAGCCGGAGCCCAGTCCATGGCTTTGGGCATGAAAGAACTAGAAGCATATCAAGTGTATCAGCTCAATTATGTAA GGATTTTGTTGCTGGGAGATGCAGGAGAGGCAGTCATTGCCCGTTTCTTCACCAAGATACTCAGACGTGTGAGGATGACTGGGAAAGAAGACCCAGGAAA GCTTCAGCTTCAAAATATCCTATCTCCCATGATTCTAAGCAGTACCCAATGGGGAGTGGAAGATCTGCTGATTGCTGTAATGAGTTTCTAAAAGGAAGCT GTAGAAGGGGTGAATCCTGCAGGTATGCTCATCATGGTGCTTCTGATCCATCTAGTAGGGGGTCCGCAAATGATGGTATTAGAGAAAGAGATAATGACCG AAGGCATAGATATGCATCTCCAGAGAGACGTGCTGAGCGTGAAACCCGCAGAGCAGCTGATATTCCCTGCAAATTTTTTGCTGCAGGTAATTGCCGGAAT GGAAAATATTGCAGGTTTTCTCATAATGATCAGACACCAAGTCCTGACAAAAGATCACGAGATGGTAGGTGGCCACCAAGCCAAAACTCAGATGATGTGG AAAAATCATGGAATGATCCAAAATGGAGTGAGAGTCATACTTCAGATGCAGCAAAATTGAGTGAAAATAAAAATGAAAAATTGGATGCACCTGAATTGAG GCTCTCTGTACGGTGTATGGAGGATGGATGGGGCCATAATTTGGTCGAGAACAAGACACACAATAATCCTCCAACAAATGAAGTGGTTGAGATCGACAAA AAGGAAGCCCTCCCATTGAAGACAGAAAATGCTGGTGATAACTCTAACGTATCTGAACAGAGAGCTCCTGAGAATTGGCTTGGTGATATGGAAATGTCTC CTGATTGGAACTACAGACTGCAACCTTCCAACCATATCAACAAAGGAGAGCATGCTTCTTTATCCAGCTGTGAACTTCAGGATGGTTCAGGCCGGGCACG TGATACCGCTGCAATCATGCCACCAATTTCAAATGAAACATCTTCCATTCAACAGGGATACAATTTAAAGGAGATTGGTGGTAGTGCTTTGCCACATGAT GATGGTGTGACTGGAAAAACTGCCGGTTCTTACATTGACATTTCTACGAATGCTCTCGCAACACAAAGCTTCAATAAAAATGGCCTGAGTTCAATTGCTT CACCTATTCCAAACTTGAATGCTGTTGGACATATTCAAGAAGCAATCTTGACCAACCCTCCAAGAGGAGGGACAATGACGGCTCCTCAAAATCAGACACT GGTTCAGGACAGAAAAATGATCAACATTCCCGATATTGGGAATGTAAATGCACCACTTGTGAATTTGGGAATTCCAATGGCTCAAAACATGGCTAGTAAT GAACATTTGACTCAGCTTACCAGCCTTTCTGTCTCTCTGGCCCAGTTCCTTGCGAATGGACAGCAGCTTCCGCAACTTTATGCTGCTCGTAATTCGCATA ATGACACCTTTGCCAACTCAGAGGGCACTGTCAAACCAGATTCTATGGTGACCATTCAGCCCCGGAAGCAATATGATCCTATATGTGACAGCGTGGAGCC TGGGAAGCATCATGTCAATACTAATCCTCCAGATCAGAAACTAGAATTACTATCCAAAAACTTGTCCCCGTCATCCCTTTCTGCTGGACTGATTGGTGGT GATTTTAACAAGTTTCACTCTGAGCAAGAGTTCATTGATAAGAGCTCCCAGTTAAATCAGCCGGGTCCAGGTGTGAGTTCTGAAGTTAACAAGGAAAACA ATGGAGTGGGGTCTGAGGAAAGCAATAAAGTACAAGAGCAGGATAAGGGTGCACAAGAGAATGGTCCCTTGGAGAACAGTGATGGTGATGGCAAAGCTGA TGAGAGCAAGAAAAATAAGGATGCAAAGGGAAGTCGTGCATTTAAGTTTGCGCTGGTGGAGTTCGTTAAGGATCTACTGAAACCTGCATGGAAGGAAGGT CAAATGAGCAAAGACGCTTACAAGAACATAGTTAAGAAAGTGGTTGACAAAGTTACTGGAACTATGCAGAGTGCAAGTATTCCTACAACGCAAGAAAAAA TTGAACAATACCTGTTGGTTTCAAAACCAAAGCTGACCAAACTTGTACAGGCATATGTGGAGAAATTTCAGAAGGACAAATGA
AA sequence Show only first row Show all	>Potri.007G107800.5 pacid=42765267 polypeptide=Potri.007G107800.5.p locus=Potri.007G107800 ID=Potri.007G107800.5.v4.1 annot-version=v4.1 MKEGGATSVRMSGSGRKRSSKWDLKEGPRMSFEDVEDNTWPGKAGISFRDKESRRDWLPPEAAGGTRSKWSAMEPLPGRRSSRRDDNIDEDRSRTLKATY EDESYGTRMSPGLDEWRQKSFRNSPKNEYKRTRRSQSRSRSRSRSPVHGFGHERTRSISSVSAQLCKDFVAGRCRRGSHCPFLHQDTQTCEDDWERRPRK ASASKYPISHDSKQYPMGSGRSADCCNEFLKGSCRRGESCRYAHHGASDPSSRGSANDGIRERDNDRRHRYASPERRAERETRRAADIPCKFFAAGNCRN GKYCRFSHNDQTPSPDKRSRDGRWPPSQNSDDVEKSWNDPKWSESHTSDAAKLSENKNEKLDAPELRLSVRCMEDGWGHNLVENKTHNNPPTNEVVEIDK KEALPLKTENAGDNSNVSEQRAPENWLGDMEMSPDWNYRLQPSNHINKGEHASLSSCELQDGSGRARDTAAIMPPISNETSSIQQGYNLKEIGGSALPHD DGVTGKTAGSYIDISTNALATQSFNKNGLSSIASPIPNLNAVGHIQEAILTNPPRGGTMTAPQNQTLVQDRKMINIPDIGNVNAPLVNLGIPMAQNMASN EHLTQLTSLSVSLAQFLANGQQLPQLYAARNSHNDTFANSEGTVKPDSMVTIQPRKQYDPICDSVEPGKHHVNTNPPDQKLELLSKNLSPSSLSAGLIGG DFNKFHSEQEFIDKSSQLNQPGPGVSSEVNKENNGVGSEESNKVQEQDKGAQENGPLENSDGDGKADESKKNKDAKGSRAFKFALVEFVKDLLKPAWKEG QMSKDAYKNIVKKVVDKVTGTMQSASIPTTQEKIEQYLLVSKPKLTKLVQAYVEKFQKDK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18640	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.007G107800 [exp]	0	1
AT3G55200		AtSAP130a	Arabidopsis thaliana spliceoso...		Potri.010G212100 [exp]	1.41	0.8964
AT3G52250	MYB		Duplicated homeodomain-like su...		Potri.010G220000 [exp]	2.82	0.9023
AT3G12770		MEF22	mitochondrial editing factor ...		Potri.013G152000 [exp]	4.00	0.8895
AT4G01570			Tetratricopeptide repeat (TPR)...		Potri.002G183100 [exp]	4.89	0.8908
AT3G62010			unknown protein		Potri.002G184400 [exp]	6.48	0.8813
AT2G18790		OOP1, HY3, PHYB	OUT OF PHASE 1, phytochrome B ...		Potri.008G105200 [exp]	7.14	0.8534	Pt-PHYB.1
AT3G21180		ATACA9, ACA9	autoinhibited Ca\(2+\)-ATPase ...		Potri.008G008100 [exp]	8.66	0.8453
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.013G154300 [exp]	8.83	0.8821
					Potri.002G124250 [exp]	10.39	0.8404
AT1G72390			unknown protein		Potri.001G165800 [exp]	10.72	0.8877

Compare expression of checked genes

Potri.007G107800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.