Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21130 504 / 2e-176 EMB2271 EMBRYO DEFECTIVE 2271, Transducin/WD40 repeat-like superfamily protein (.1) AT4G05410 503 / 2e-175 YAO YAOZHE, Transducin/WD40 repeat-like superfamily protein (.1) AT1G48630 87 / 2e-18 RACK1B_AT receptor for activated C kinase 1B (.1) AT3G18130 86 / 3e-18 RACK1C_AT receptor for activated C kinase 1C (.1) AT5G52820 86 / 7e-18 WD-40 repeat family protein / notchless protein, putative (.1) AT2G43770 79 / 1e-15 Transducin/WD40 repeat-like superfamily protein (.1) AT1G18080 78 / 1e-15 RACK1A_AT, ATARCA RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 76 / 5e-15 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G50230 76 / 2e-14 Transducin/WD40 repeat-like superfamily protein (.1) AT2G32700 72 / 4e-13 MUM1, LUH MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G061000 [exp] 801 / 0 AT4G21130 513 / 9e-180 EMBRYO DEFECTIVE 2271, Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G058000 [exp] 84 / 3e-17 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.015G041600 [exp] 79 / 1e-15 AT1G18080 537 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 79 / 1e-15 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G052700 [exp] 77 / 2e-15 AT1G18080 575 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G087200 [exp] 79 / 3e-15 AT5G50230 801 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G045800 [exp] 74 / 8e-14 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.005G148500 [exp] 69 / 9e-13 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 69 / 1e-12 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023255 [exp] 569 / 0 AT4G21130 517 / 0.0 EMBRYO DEFECTIVE 2271, Transducin/WD40 repeat-like superfamily protein (.1) Lus10008853 [exp] 464 / 1e-154 AT1G30460 563 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30, cleavage and polyadenylation specificity factor 30 (.1.2) Lus10029493 [exp] 86 / 1e-17 AT5G52820 786 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10039597 [exp] 86 / 1e-17 AT5G52820 792 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10017570 [exp] 82 / 8e-17 AT1G18080 561 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Lus10017569 [exp] 80 / 3e-16 AT1G18080 546 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003080 [exp] 80 / 5e-16 AT1G18080 506 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Lus10021059 [exp] 76 / 3e-14 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10001301 [exp] 73 / 2e-13 AT5G16750 1159 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) Lus10002860 [exp] 72 / 2e-13 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.007G107900.1 pacid=42766586 polypeptide=Potri.007G107900.1.p locus=Potri.007G107900 ID=Potri.007G107900.1.v4.1 annot-version=v4.1 ATGAAAAACAAGAATCCAAGGAAGATGGGAGGCCCCCCAGGAAAAAACAAGAGGGGCAGCAGCAAATTCTCTATGAATAGAGATCCCTTTTTCAGCAGCA GCAAAAGACGCAAGAAGGATGAAGATGAGGTTATCGAATCCGAGGAGGAGGAGTTGGACGGAGGAATGCTTAATGGTGGAGGAGAATCAGGGGAGGAGGA GGAGGAGGAGGAGGAGGAATTAGAACCGGAGGAGACGGCGGAAGAGAAGAGGCAGCGGATTGCGAAAGAGTTGGTGGAGAATCTTAGAAAGAGAGAGAAG GAGCTTGAGGATGAGGAGGATGAAGAGGGGGAGAGAGTGTTTGAGAAGGAAGGTGAGAGGGATTCTTTTGTGGCTAAAAAATTGATGCAGCAACAGCTTG AGGATAGTGGTCGTTTGAGGAGAGCCATTGCTTCTAGGGTTCAAAAGCCAGAGAGTGTCGATGGATTTGAGATCCTAGTGAAGCATCGGCAATCTGTTAC TGCTATATGCCTTTCTGATGATGACTCAAAGGGCTTTTCTGCTTCCAAAGATGGCACGATTTTGCATTGGGATGTAGACAGTGGAAAAGCTGAAAGATAC CAATGGCCTAATGAGGAAATACTAAGATCCCATGGGTCCAAGAATCCAGAAGGACGAGCAACTAAGCATAGCAGGAATGTTTTGGCGTTGTCTGTTAGCA CTGATGGTCGGTATTTGGCAAGTGGAGGCTTGGATCGACATGTTCATTTGTGGGACACCCGTACACGAGAACATATTCAGGCCTTCCCAGGTCATAAAGG TCCTGTCTCATGTTTGACTTTTAGGCAAGGGAGTTCAGAACTTTTTTCTGGTTCATTTGATCGATCAATCAAGATATGGAATGTAGAAGATAGAGCTTAC ATGAACACATTGTTTGGTCACCAAAGTGAAGTGTTAGCAATCGATTGTTTGTGGCAAGAACGAGTGCTGGCTGTTGGGCGTGATCGGAGCATGCAATTGT TTAAGGTCCATGATGAGTCAAGGCTGATATTTCGTTCTTCGACATCATCTTTGGAGTGTTGCTGTTTTATTGACAACAGCGAATTTCTATCTGGATCAGA TGATGGAAATATTGCACTTTGGGGCGTACAAAAGAAGAAGCCTGTGTACATTGTTAAGAATGCTCATGCTTTGTCGACTGATGTCAATAATGGTGAACTG AAGGATAGAGGAAGAAATTACAATGGTCATATTGCATCTTCCTGGGTAAGTTCAGTTGGTGTATGTAGAGGCAGTGACCTTGCTGCCTCTGGAGCTGGGA ATGGCTCTGTCCACTTATGGGCTATTGAAGGTGCTGGCAAAGGCATTCGGCCCTTGTATGATCTTCCATTGATTGGATTTGTAAATTCCCTGGCTTTTGC AAAATCTGGAAAATTCCTTGTCGCTGGGGTTGGACAGGAACCTCGCCTAGGAAGATGGGGACACAATTCTGCCGCTCGAAACGGAGTTGCAATTCAGCGG TTGAAGCTTTTGTAG
AA sequence Show only first row Show all	>Potri.007G107900.1 pacid=42766586 polypeptide=Potri.007G107900.1.p locus=Potri.007G107900 ID=Potri.007G107900.1.v4.1 annot-version=v4.1 MKNKNPRKMGGPPGKNKRGSSKFSMNRDPFFSSSKRRKKDEDEVIESEEEELDGGMLNGGGESGEEEEEEEEELEPEETAEEKRQRIAKELVENLRKREK ELEDEEDEEGERVFEKEGERDSFVAKKLMQQQLEDSGRLRRAIASRVQKPESVDGFEILVKHRQSVTAICLSDDDSKGFSASKDGTILHWDVDSGKAERY QWPNEEILRSHGSKNPEGRATKHSRNVLALSVSTDGRYLASGGLDRHVHLWDTRTREHIQAFPGHKGPVSCLTFRQGSSELFSGSFDRSIKIWNVEDRAY MNTLFGHQSEVLAIDCLWQERVLAVGRDRSMQLFKVHDESRLIFRSSTSSLECCCFIDNSEFLSGSDDGNIALWGVQKKKPVYIVKNAHALSTDVNNGEL KDRGRNYNGHIASSWVSSVGVCRGSDLAASGAGNGSVHLWAIEGAGKGIRPLYDLPLIGFVNSLAFAKSGKFLVAGVGQEPRLGRWGHNSAARNGVAIQR LKLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21130		EMB2271	EMBRYO DEFECTIVE 2271, Transdu...		Potri.007G107900 [exp]	0	1
AT4G21130		EMB2271	EMBRYO DEFECTIVE 2271, Transdu...		Potri.005G061000 [exp]	1.41	0.9492
AT4G25730			FtsJ-like methyltransferase fa...		Potri.009G118400 [exp]	2.00	0.8743
AT1G23280			MAK16 protein-related (.1)		Potri.012G085300 [exp]	2.64	0.8505
AT5G27395			Mitochondrial inner membrane t...		Potri.013G026700 [exp]	3.46	0.8870
AT5G02050			Mitochondrial glycoprotein fam...		Potri.016G102200 [exp]	3.87	0.8733	SDH4.2
AT2G37230			Tetratricopeptide repeat (TPR)...		Potri.010G077400 [exp]	4.79	0.8084
AT3G56570			SET domain-containing protein ...		Potri.004G135700 [exp]	4.89	0.8299
AT2G31660		EMA1, URM9, SAD...	UNARMED 9, SUPER SENSITIVE TO ...		Potri.002G232600 [exp]	5.29	0.8280
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Potri.014G027200 [exp]	5.65	0.8483
AT1G03110		TRM82, AtTRM82	tRNA modification 82, Transduc...		Potri.005G211600 [exp]	6.63	0.8342

Compare expression of checked genes

Potri.007G107900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.