Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00120 149 / 3e-45 bHLH IND1, GT140, bHLH040, IND, EDA33 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G09750 141 / 2e-41 bHLH HEC3, bHLH043 HECATE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G50330 128 / 2e-36 bHLH HEC2, bHLH037 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G21330 131 / 3e-36 bHLH bHLH087 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G67060 120 / 2e-33 bHLH HEC1, bHLH088 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G01310 86 / 5e-19 bHLH APTX, bHLH140 APRATAXIN-like (.1) AT2G14760 77 / 2e-16 bHLH bHLH084 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT4G30980 75 / 9e-16 bHLH LRL2, bHLH069 LJRHL1-like 2 (.1) AT2G24260 75 / 1e-15 bHLH LRL1, bHLH066 LJRHL1-like 1 (.1) AT1G66470 74 / 1e-15 bHLH AtRHD6, RHD6, bHLH083 ROOT HAIR DEFECTIVE6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G060900 [exp] 333 / 5e-117 AT4G00120 151 / 7e-46 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.007G044600 [exp] 139 / 2e-40 AT5G67060 150 / 7e-45 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G027300 [exp] 129 / 1e-36 AT5G67060 141 / 6e-41 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G125000 [exp] 128 / 5e-36 AT5G67060 137 / 2e-39 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G191800 [exp] 129 / 6e-35 AT3G21330 230 / 2e-71 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G138900 [exp] 117 / 5e-32 AT3G50330 134 / 2e-38 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.006G102600 [exp] 87 / 3e-21 AT5G01310 112 / 4e-29 APRATAXIN-like (.1) Potri.016G120800 [exp] 86 / 7e-21 AT5G01310 109 / 3e-28 APRATAXIN-like (.1) Potri.017G126800 [exp] 77 / 1e-16 AT5G37800 203 / 3e-63 ARABIDOPSIS THALIANA RHD SIX-LIKE 1, RHD SIX-LIKE 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033488 [exp] 165 / 4e-51 AT4G00120 143 / 4e-43 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10042647 [exp] 156 / 6e-47 AT3G50330 163 / 1e-49 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10005710 [exp] 148 / 8e-44 AT3G50330 160 / 1e-48 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10012670 [exp] 124 / 6e-35 AT3G50330 158 / 3e-48 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10003500 [exp] 111 / 8e-29 AT3G21330 192 / 5e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10009745 [exp] 111 / 1e-28 AT3G21330 112 / 2e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10002213 [exp] 86 / 2e-20 AT5G01310 108 / 8e-28 APRATAXIN-like (.1) Lus10003386 [exp] 86 / 3e-19 AT5G01310 107 / 1e-24 APRATAXIN-like (.1) Lus10017634 [exp] 77 / 2e-16 AT1G66470 171 / 2e-51 ROOT HAIR DEFECTIVE6 (.1) Lus10033592 [exp] 77 / 2e-16 AT1G66470 174 / 5e-53 ROOT HAIR DEFECTIVE6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.007G108000.2 pacid=42765657 polypeptide=Potri.007G108000.2.p locus=Potri.007G108000 ID=Potri.007G108000.2.v4.1 annot-version=v4.1 ATGAATATCAATCAAACTGAATTCACAAACCACACTTGGAATCTTCATGTGTCCATGGAAGATCAAATTCTTCATCATGACCGGCTTCCTTTTGTCTCAA TTTGCCCTAGCTACCCTCTCCAACTACAACAAACACCAATCCCAGCTCCAAACCAAGTATCACTCCCAACTTTTCTTAGTCATGACCAAATAGGAAACAG CACAGATGAAGCGGTTCAGGATGAGCCAGAAGAAGAACTAGGAGCAATGAAAGAAATGATGTATAGAGTTGCGGCGATGCAGCCTGTGGACATAGATCCG GTCACGATTCACAAACCTAAAAGGAAAAACGTTAGGATTAGCGATGACCCTCAGAGCGTGGCAGCACGTCTCAGACGAGAAAGGATAAGTGAAAAGATCA GAATTCTTCAACGGCTTGTTCCCGGGGGGAGAAAAATGGACACTGCTTCAATGCTAGATGAAGCTATCCGTTACGTCAAGTTCTTGAAACGGCAAATCCG CTCACTCCAACCTAATCATCAGCACCAACCATGCAACACTAATGGAGATTGGCAAGTTCCATACAACGACAAACCTCTTAATTCTATCACCACCACCACC ACCACCTCATCCTCCCTCGAACCTCGAGCTGCACGCCTTGGATACATTCTTGGTGATAATGGGGACAATCCCTTGTGCTTTAATCACGAGGTAATAAGTG ATCAGGGCTAA
AA sequence Show only first row Show all	>Potri.007G108000.2 pacid=42765657 polypeptide=Potri.007G108000.2.p locus=Potri.007G108000 ID=Potri.007G108000.2.v4.1 annot-version=v4.1 MNINQTEFTNHTWNLHVSMEDQILHHDRLPFVSICPSYPLQLQQTPIPAPNQVSLPTFLSHDQIGNSTDEAVQDEPEEELGAMKEMMYRVAAMQPVDIDP VTIHKPKRKNVRISDDPQSVAARLRRERISEKIRILQRLVPGGRKMDTASMLDEAIRYVKFLKRQIRSLQPNHQHQPCNTNGDWQVPYNDKPLNSITTTT TTSSSLEPRAARLGYILGDNGDNPLCFNHEVISDQG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00120	bHLH	IND1, GT140, bH...	INDEHISCENT, EMBRYO SAC DEVELO...		Potri.007G108000 [exp]	0	1
AT4G13540			unknown protein		Potri.008G174400 [exp]	20.73	0.6746
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Potri.001G418200 [exp]	28.87	0.6704
AT1G14550			Peroxidase superfamily protein...		Potri.010G236870 [exp]	222.06	0.5112
					Potri.004G067750 [exp]	250.90	0.5206
AT5G20820			SAUR-like auxin-responsive pro...		Potri.006G137000 [exp]	259.71	0.5013	SAUR6
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G018500 [exp]	277.17	0.5013

Compare expression of checked genes

Potri.007G108000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.