Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48920 74 / 4e-16 TED7 tracheary element differentiation-related 7 (.1) AT1G43790 50 / 3e-08 TED6 tracheary element differentiation-related 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G060700 [exp] 152 / 1e-45 AT5G48920 73 / 2e-15 tracheary element differentiation-related 7 (.1) Potri.002G072000 [exp] 56 / 1e-09 AT1G43790 47 / 2e-07 tracheary element differentiation-related 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018925 [exp] 50 / 6e-08 AT1G43790 54 / 4e-10 tracheary element differentiation-related 6 (.1) Lus10029760 [exp] 45 / 1e-05 AT1G43790 55 / 8e-10 tracheary element differentiation-related 6 (.1) Lus10028626 [exp] 44 / 2e-05 AT5G48920 51 / 7e-08 tracheary element differentiation-related 7 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.007G108100.1 pacid=42766585 polypeptide=Potri.007G108100.1.p locus=Potri.007G108100 ID=Potri.007G108100.1.v4.1 annot-version=v4.1 ATGGCTCCCACTAATAACTATGACTACAACTTCCCGTATTTTCCTCTACCGCCACCACATAATAATCCTCCATCCCCTCCAAAAGTTGCGCCACCTCATA GTTCTCCATCCCCTCCAAATGTGTCCCCGCCCCATAATTTTCCTCCACCACACATTACTCCCCCCTCTCCAAAAGTTCCTCCTCCACCACATCATCCGAT TACACCACCACCTACTCATCCATTTCATCCACCACCACCCCATCACATTCCTCCACCCCCTCATGTTATTCCACCTCCACCACCAACACCAGGACATCAT TCGACTGTTATAATTGTTGTCTTTGTCTCACTCGGTGGTCTATTCTTTCTTGCATTCCTCTCAGTGGCTCTCTGCTGCTTCATTAAGAAGAAAAAGAAGA AAACAGTTCAGAAAACTGAGATCTTAGAGTTCGATGAGCACACTAAAGTCCAGGAAGCCATTGTTCCAGGTCCTCATGGTGAGAAAATCACAGTACTAAA CATTGAAGAGGATGTGCATCTTGTAGAGGAAATTAAGAAAAACGAAAAGCTAACTGAAGGTTCGCACATCAAGTCGGCTCACGATCGTCCCCTGTATTCT GACATAGCAACACCCTCTTCTCAGTATAATCAGCACCATCTCGAGCACAAGGTCTGA
AA sequence Show only first row Show all	>Potri.007G108100.1 pacid=42766585 polypeptide=Potri.007G108100.1.p locus=Potri.007G108100 ID=Potri.007G108100.1.v4.1 annot-version=v4.1 MAPTNNYDYNFPYFPLPPPHNNPPSPPKVAPPHSSPSPPNVSPPHNFPPPHITPPSPKVPPPPHHPITPPPTHPFHPPPPHHIPPPPHVIPPPPPTPGHH STVIIVVFVSLGGLFFLAFLSVALCCFIKKKKKKTVQKTEILEFDEHTKVQEAIVPGPHGEKITVLNIEEDVHLVEEIKKNEKLTEGSHIKSAHDRPLYS DIATPSSQYNQHHLEHKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G48920		TED7	tracheary element differentiat...		Potri.007G108100 [exp]	0	1
AT1G33590			Leucine-rich repeat (LRR) fami...		Potri.013G098900 [exp]	4.24	0.7733
AT1G33590			Leucine-rich repeat (LRR) fami...		Potri.013G098850 [exp]	5.09	0.8158
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Potri.002G178000 [exp]	31.74	0.7569	Pt-KCS1.1
AT5G26330			Cupredoxin superfamily protein...		Potri.009G136200 [exp]	33.58	0.6673
AT5G12970			Calcium-dependent lipid-bindin...		Potri.003G210801 [exp]	39.11	0.7458
AT3G57520		RS2, ATSIP2	raffinose synthase 2, seed imb...		Potri.015G086400 [exp]	49.95	0.6618
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Potri.005G035800 [exp]	50.41	0.7000	HAP5.6
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Potri.001G251400 [exp]	61.71	0.7504
AT3G47800			Galactose mutarotase-like supe...		Potri.004G129700 [exp]	102.95	0.7188
AT4G24350			Phosphorylase superfamily prot...		Potri.008G028700 [exp]	103.15	0.7033

Compare expression of checked genes

Potri.007G108100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.