Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64630 667 / 0 MUB3.9, NFB1, NFB01, MUB3, FAS2 FASCIATA 2, Transducin/WD40 repeat-like superfamily protein (.1.2.3) AT3G44530 143 / 1e-36 HIRA homolog of histone chaperone HIRA (.1.2) AT3G21540 72 / 5e-13 transducin family protein / WD-40 repeat family protein (.1) AT5G67320 71 / 5e-13 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT3G49660 69 / 9e-13 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 69 / 5e-12 Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 67 / 5e-12 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 68 / 7e-12 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G52820 67 / 7e-12 WD-40 repeat family protein / notchless protein, putative (.1) AT1G61210 67 / 1e-11 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G184900 [exp] 149 / 2e-38 AT3G44530 1365 / 0.0 homolog of histone chaperone HIRA (.1.2) Potri.009G144800 [exp] 147 / 7e-38 AT3G44530 1398 / 0.0 homolog of histone chaperone HIRA (.1.2) Potri.006G121100 [exp] 75 / 5e-14 AT3G21540 1246 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.008G002300 [exp] 73 / 2e-13 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 72 / 3e-13 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G058000 [exp] 69 / 2e-12 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.018G020200 [exp] 67 / 1e-11 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.002G051900 [exp] 66 / 1e-11 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 66 / 1e-11 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033489 [exp] 659 / 0 AT5G64630 612 / 0.0 FASCIATA 2, Transducin/WD40 repeat-like superfamily protein (.1.2.3) Lus10020888 [exp] 582 / 0 AT5G64630 563 / 0.0 FASCIATA 2, Transducin/WD40 repeat-like superfamily protein (.1.2.3) Lus10000155 [exp] 173 / 3e-52 AT5G64630 147 / 1e-42 FASCIATA 2, Transducin/WD40 repeat-like superfamily protein (.1.2.3) Lus10020585 [exp] 140 / 1e-35 AT3G44530 1395 / 0.0 homolog of histone chaperone HIRA (.1.2) Lus10004893 [exp] 139 / 3e-35 AT3G44530 1389 / 0.0 homolog of histone chaperone HIRA (.1.2) Lus10014674 [exp] 74 / 4e-14 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 72 / 9e-14 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10013452 [exp] 73 / 2e-13 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10041007 [exp] 73 / 2e-13 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10024972 [exp] 71 / 1e-12 AT5G67320 819 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.007G108200.1 pacid=42766025 polypeptide=Potri.007G108200.1.p locus=Potri.007G108200 ID=Potri.007G108200.1.v4.1 annot-version=v4.1 ATGAAGGGAGGAACAGTGCAAATTAATTGGCACGACACCAAACCAGTCCTAACCCTAGACTTCCACCCATTCTCCGGTCTCCTCGCCACCGGCGGCGCCG ATTACGATATCAAGCTTTGGGTGATAAATTCAGGCCAAGCACAGAAGAAAATCGCGACGGCAACTTATCTAAATAGCCTTTCATATCATGGTTCAGCTGT CAATGTGCTCCGTTTCTCTCCATCTGGAGAATTGCTTGCCTCAGGTGCTGATGGGGGAGAGCTGATTATATGGAAGTTACATTCCACAGAAACTGGTCAA ACATGGAAAGTCCTCAAGAACTTCTTATTTCACCGCAAAGATGTTCTGGACTTGGAGTGGTCTGCAGACTCTGCATATCTGATCTCTGGATCAGTTGACA ATTCTTGCATCATATGGGATGTTAACAAAGGTTCTGTACATCAGCTATTGGATGGTCATTTCCATTATGTTCAAGGTGTAGCTTGGGATCCATTGGCCAA GTACATTGCTTCTCTTAGTTCAGATAGAACTTGCAGAATTTATGTGAATAAGCCTCAGACAAAGACAAAAGGTGCCGAGAAGATGAACTATGTTTCTCAG CATGTCATTACAAAGGCAGAACAGCAGATGTCTACGAAAACACATCTTTTTCACGATGAGACGTTACCATCTTTCTTCCGAAGACTAGCCTGGTCACCTG ATGGATCCTTTTTACTTGTGCCAGCAGGTTCTTACAAAATGTCAGCTGCATCAGAAACAGTAAATACTGCTTATGCATTTTCCAGAATGGATCTTTCAAG ACCTGCAATAATGCTCCCTGGTGCTAGCAAGCCTGTTGTGGCAGTTCGTTTTTGTCCAGTGGCTTTTAACCTTAGGGGATTAGCCTCAGCTGGGCTCTTC AAACTTCCCTATCGCCTGATTTTTGCTGTGGCAACTTTAAATTCATTATATATCTATGATACAGAGAGCGTTCCTCCCATAGCAATCTTGGCCGGTCTTC ATTATGCAGCCATAACCGACATTGCATGGTCATCTAATGCTCAGTATTTAGCTTTGTCTTCCCGAGATGGATACTGTACTTTAGTAGAATTTGAAACTAA TGAACTGGGTTCGCCCATCTCCTCGGCAGACGAGAGGAAAGACGCAGTCCATCAGAACAAGAGCCCTGATACGCAGGAACCAGAGTGCATGATAATTGAA ACAACGACAAATAATGGTTGTATAGCAGAAGACAGTGGAAAAACAGTAGTAGCAAAGAATGAAGGAAAGCAGCCATCACCAGTCTCCATAAGTACTCCCA TCTCAAATAAGCCAGCCAAGAGGCGAATCACTCCCATGGCAATTGATCCACAGTAA
AA sequence Show only first row Show all	>Potri.007G108200.1 pacid=42766025 polypeptide=Potri.007G108200.1.p locus=Potri.007G108200 ID=Potri.007G108200.1.v4.1 annot-version=v4.1 MKGGTVQINWHDTKPVLTLDFHPFSGLLATGGADYDIKLWVINSGQAQKKIATATYLNSLSYHGSAVNVLRFSPSGELLASGADGGELIIWKLHSTETGQ TWKVLKNFLFHRKDVLDLEWSADSAYLISGSVDNSCIIWDVNKGSVHQLLDGHFHYVQGVAWDPLAKYIASLSSDRTCRIYVNKPQTKTKGAEKMNYVSQ HVITKAEQQMSTKTHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKMSAASETVNTAYAFSRMDLSRPAIMLPGASKPVVAVRFCPVAFNLRGLASAGLF KLPYRLIFAVATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSSNAQYLALSSRDGYCTLVEFETNELGSPISSADERKDAVHQNKSPDTQEPECMIIE TTTNNGCIAEDSGKTVVAKNEGKQPSPVSISTPISNKPAKRRITPMAIDPQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64630		MUB3.9, NFB1, N...	FASCIATA 2, Transducin/WD40 re...		Potri.007G108200 [exp]	0	1
AT3G23740			unknown protein		Potri.002G236300 [exp]	1.73	0.9238
AT1G44900		ATMCM2, MCM2	MINICHROMOSOME MAINTENANCE 2, ...		Potri.001G070500 [exp]	5.47	0.9225
AT2G38720		MAP65-5	microtubule-associated protein...		Potri.003G192400 [exp]	7.41	0.8814
AT1G27880			DEAD/DEAH box RNA helicase fam...		Potri.010G056500 [exp]	8.48	0.9009
AT3G42660			transducin family protein / WD...		Potri.012G065200 [exp]	8.71	0.9065
AT3G52630			Nucleic acid-binding, OB-fold-...		Potri.006G212100 [exp]	8.94	0.8338
AT3G52115		AtCOM1, ATGR1	gamma response gene 1 (.1)		Potri.009G064200 [exp]	9.16	0.8329
AT3G27060		ATTSO2, TSO2	TSO MEANING 'UGLY' IN CHINESE ...		Potri.017G063900 [exp]	9.16	0.8927
AT5G44635		MCM6	MINICHROMOSOME MAINTENANCE 6, ...		Potri.001G074000 [exp]	11.18	0.9056
AT5G46280		MCM3	MINICHROMOSOME MAINTENANCE 3, ...		Potri.004G131600 [exp]	11.48	0.9081

Compare expression of checked genes

Potri.007G108200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.