Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77120 626 / 0 ADH1, ATADH, ATADH1 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) AT5G43940 429 / 3e-150 PAR2, ATGSNOR1, HOT5, GSNOR, ADH2 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) AT5G24760 395 / 5e-137 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) AT1G32780 369 / 4e-126 GroES-like zinc-binding dehydrogenase family protein (.1) AT1G64710 355 / 8e-121 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G22440 308 / 2e-102 Zinc-binding alcohol dehydrogenase family protein (.1) AT5G42250 305 / 4e-101 Zinc-binding alcohol dehydrogenase family protein (.1) AT1G22430 301 / 9e-100 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT4G22110 298 / 9e-99 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT5G63620 111 / 5e-27 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G108401 [exp] 718 / 0 AT1G77120 630 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108601 [exp] 711 / 0 AT1G77120 634 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060000 [exp] 693 / 0 AT1G77120 658 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060200 [exp] 691 / 0 AT1G77120 627 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060300 [exp] 687 / 0 AT1G77120 626 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108701 [exp] 669 / 0 AT1G77120 656 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.002G072100 [exp] 635 / 0 AT1G77120 645 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.002G254900 [exp] 435 / 2e-152 AT5G43940 694 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.014G193800 [exp] 427 / 2e-149 AT5G43940 684 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010506 [exp] 641 / 0 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10034042 [exp] 639 / 0 AT1G77120 672 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10042787 [exp] 636 / 0 AT1G77120 674 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10029759 [exp] 635 / 0 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10029757 [exp] 578 / 0 AT1G77120 602 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10022853 [exp] 406 / 7e-139 AT5G43940 700 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10000496 [exp] 400 / 1e-137 AT5G43940 693 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10031890 [exp] 330 / 1e-111 AT5G24760 566 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) Lus10004786 [exp] 330 / 3e-111 AT1G22430 529 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10033241 [exp] 323 / 9e-108 AT1G32780 511 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00107 [poplar] [flax] ADH_zinc_N Zinc-binding dehydrogenase CL0296 [poplar] [flax] GroES PF08240 [poplar] [flax] ADH_N Alcohol dehydrogenase GroES-like domain
Representative CDS sequence Show only first row Show all	>Potri.007G108500.1 pacid=42765858 polypeptide=Potri.007G108500.1.p locus=Potri.007G108500 ID=Potri.007G108500.1.v4.1 annot-version=v4.1 ATGTCGAGCACTGCTGGTCAAGTCATATGTTGCAAAGCTGCTGTGGCATGGGAAGCTGGGAAGCCACTGGTAATAGAAGAAGTGGAGGTGGCTCCTCCTC AAGCTATGGAGGTTCGTTTGAAGATCCTCTTTACCTCCCTCTGCCACACTGATGTTTACTTCTGGGAAGCCAAGGGTCAAACCCCATTGTTTCCTCGAAT ATTTGGTCATGAAGCAGGAGGGATTGTTGAGAGTGTTGGGGAGGGTGTGACAGACCTCAAACCGGGTGACCATGTGCTTCCTGTCTTCACAGGAGAGTGT AAGGAATGCCGACATTGCAAATCAGAAGAGAGTAATATGTGCAATCTTCTTAGGATTAACACTGACAGGGGTGTGATGCTGAATGATGGCAAGTCAAGGT TTTCGATCAGAGGGCAGCCCATTTACCATTTTGTTGGCACCTCAACCTTTAGCGAGTACACTGTGGTTCATGTTGGCTGTGTTGCCAAGATCAATCCTGC TGCTCCTCTCGACAAAGTTTGTGTTCTGAGCTGTGGAATCTCTACAGGTCTTGGTTCCACCTTGAATGTTGCAAAACCAAAGAAAGGCTCTTCGATAGCC ATTTTCGGACTGGGAGCTGTAGGCCTCGCGGCTGCTGAAGGGGCTCGGATTGCTGGTGCTTCAAGAATCATTGGTGTCGATTTGAATTCCAATAGATTCG ATGAAGCCAAGAAGTTTGGTGTCACTGAGTTTGTGAACCCAAAAGATCATAACAAGCCTGTTCAAGAGGTGATAGCTGAAATGACCAATGGAGGAGTTGA TCGAAGTGTCGAGTGTACTGGAAGTGTCAATGCCATGATTTCTGCATTTGAATGCGTCCATGATGGATGGGGTGTTGCTGTACTTGTTGGTGTGCCGAAC AAAGATGATTCTTTCAAAACCCATCCAATGAATGTCCTGAATGAGAGGACTCTCAAGGGCACCTTCTTCGGCAACTACAAACCGCGCTCCGACCTTCCTT CAGTTGTCGAGAAGTACATGAACAAGGAGCTGGAGCTAGAGAAATTCATCACCCATGAAGTCCCTTTCTCAGAAATCAACAAGGCTTTCGAGTACATGCT TAGTGGAGCTGGCCTGAGGTGTATTATCCGTATGGGTGCATAA
AA sequence Show only first row Show all	>Potri.007G108500.1 pacid=42765858 polypeptide=Potri.007G108500.1.p locus=Potri.007G108500 ID=Potri.007G108500.1.v4.1 annot-version=v4.1 MSSTAGQVICCKAAVAWEAGKPLVIEEVEVAPPQAMEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLKPGDHVLPVFTGEC KECRHCKSEESNMCNLLRINTDRGVMLNDGKSRFSIRGQPIYHFVGTSTFSEYTVVHVGCVAKINPAAPLDKVCVLSCGISTGLGSTLNVAKPKKGSSIA IFGLGAVGLAAAEGARIAGASRIIGVDLNSNRFDEAKKFGVTEFVNPKDHNKPVQEVIAEMTNGGVDRSVECTGSVNAMISAFECVHDGWGVAVLVGVPN KDDSFKTHPMNVLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELELEKFITHEVPFSEINKAFEYMLSGAGLRCIIRMGA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Potri.007G108500 [exp]	0	1
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Potri.007G108601 [exp]	1.00	0.9971
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Potri.007G108401 [exp]	2.44	0.9956
AT3G62550			Adenine nucleotide alpha hydro...		Potri.013G009800 [exp]	7.74	0.9127
AT2G44310			Calcium-binding EF-hand family...		Potri.002G218700 [exp]	10.39	0.9405
AT3G13310			Chaperone DnaJ-domain superfam...		Potri.006G001301 [exp]	11.22	0.9395
AT2G44310			Calcium-binding EF-hand family...		Potri.002G219000 [exp]	11.31	0.9388
AT3G29970			B12D protein (.1)		Potri.004G117300 [exp]	11.83	0.9447
					Potri.009G081150 [exp]	12.12	0.8463
AT2G44310			Calcium-binding EF-hand family...		Potri.002G218800 [exp]	13.78	0.9369
AT2G44310			Calcium-binding EF-hand family...		Potri.002G218300 [exp]	14.07	0.9355

Compare expression of checked genes

Potri.007G108500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.