Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77120 656 / 0 ADH1, ATADH, ATADH1 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) AT5G43940 461 / 1e-162 PAR2, ATGSNOR1, HOT5, GSNOR, ADH2 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) AT5G24760 418 / 6e-146 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) AT1G64710 385 / 7e-133 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G32780 384 / 3e-132 GroES-like zinc-binding dehydrogenase family protein (.1) AT1G22440 334 / 7e-113 Zinc-binding alcohol dehydrogenase family protein (.1) AT5G42250 334 / 1e-112 Zinc-binding alcohol dehydrogenase family protein (.1) AT4G22110 328 / 4e-110 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G22430 325 / 3e-109 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT5G63620 138 / 8e-37 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G060000 [exp] 708 / 0 AT1G77120 658 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108601 [exp] 707 / 0 AT1G77120 634 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108401 [exp] 704 / 0 AT1G77120 630 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108500 [exp] 701 / 0 AT1G77120 626 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060200 [exp] 699 / 0 AT1G77120 627 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060300 [exp] 696 / 0 AT1G77120 626 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.002G072100 [exp] 652 / 0 AT1G77120 645 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.002G254900 [exp] 461 / 8e-163 AT5G43940 694 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.014G193800 [exp] 452 / 2e-159 AT5G43940 684 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010506 [exp] 649 / 0 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10042787 [exp] 647 / 0 AT1G77120 674 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10034042 [exp] 646 / 0 AT1G77120 672 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10029759 [exp] 644 / 0 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10029757 [exp] 594 / 0 AT1G77120 602 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10022853 [exp] 438 / 2e-151 AT5G43940 700 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10000496 [exp] 430 / 1e-149 AT5G43940 693 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10031890 [exp] 360 / 6e-123 AT5G24760 566 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) Lus10004786 [exp] 357 / 9e-122 AT1G22430 529 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10004785 [exp] 348 / 6e-118 AT1G22430 536 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00107 [poplar] [flax] ADH_zinc_N Zinc-binding dehydrogenase CL0296 [poplar] [flax] GroES PF08240 [poplar] [flax] ADH_N Alcohol dehydrogenase GroES-like domain
Representative CDS sequence Show only first row Show all	>Potri.007G108701.1 pacid=42764947 polypeptide=Potri.007G108701.1.p locus=Potri.007G108701 ID=Potri.007G108701.1.v4.1 annot-version=v4.1 ATGGCAAGCACTGGTCAGGTCATCCGTTGCAAAGCTGCTGTGGCATGGGAAGCTGGAAAGCCACTGGTGATCGAGGAAGTGGAGGTGGCTCCACCTCAAG CCATGGAGGTTCGTTTGAAGATCCTCTTCACATCCCTCTGCCATACTGATGTATACTTCTGGGAAGCCAAGGGGCAAACCCCATTATTTCCTCGCATTTT TGGTCATGAAGCTGGAGGGATTGTTGAGAGTGTTGGTGAAGGTGTGACAGACCTCGAGCCTGGTGACCATGTGCTTCCTGTATTCACAGGAGAGTGTAAG GAATGCCGACATTGCAAATCAGAAGAGAGTAATATGTGTGATCTTCTTCGGATTAACACTGATAGAGGTGTGATGCTGAGTGATGGCAAGTCTAGATTTT CAATTAGAGGGCAGCCCATCTACCATTTTGTTGGTACATCAACCTTCAGTGAGTACACTGTGATTCATGTTGGCTGTCTGGCCAAGATCAATCCTGCTGC TCCACTGGACAAAGTTTGTCTCCTCAGCTGTGGAATCTCTACAGGTCTTGGAGCCACCTTGAATGTTGCGAAGCCAAAGCCAGGCTCCTCCGTGGCCATT TTTGGACTGGGAGCTGTAGGCCTTGCAGCTGCTGAAGGTGCTCGGATTTCCGGTGCTTCAAGGATTATTGGTGTTGATTTGCATTCCAGTAGATTCGATG AAGCCAAGAAATTTGGCGTGACGGAGTTTGTGAACCCAAATGATCATGACAAGCCTGTTCATGAGGTGATAGCGGAGATGACTGATGGAGGAGTGGATAG AAGTGTTGAGTGTACAGGAAGTATCAGTGCCATGATTTCTGCATTCGAATGCGTCCATGATGGTTGGGGTGTTGCTGTGCTAGTCGGCGTGCCAAGCAAA GACGATTCTTTCAAAACCAATCCAATGAATTTCTTGAGTGAGAGGACTCTCAAGGGTACTTTCTTTGGAAATTACAAGCCGCGCTCTGACCTTCCTTCAG TTGTAGAGAAGTACATGAACAAGGAGCTTGAGCTAGAGAAATTTATATCCCATGAAGTCCCTTTCTCTGAAATCAACAAGGCTTTCGAGTACATGCTCGC TAAAGCTAGCCTCAGGTGTATTATCCGGATGGGTGCATAA
AA sequence Show only first row Show all	>Potri.007G108701.1 pacid=42764947 polypeptide=Potri.007G108701.1.p locus=Potri.007G108701 ID=Potri.007G108701.1.v4.1 annot-version=v4.1 MASTGQVIRCKAAVAWEAGKPLVIEEVEVAPPQAMEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLEPGDHVLPVFTGECK ECRHCKSEESNMCDLLRINTDRGVMLSDGKSRFSIRGQPIYHFVGTSTFSEYTVIHVGCLAKINPAAPLDKVCLLSCGISTGLGATLNVAKPKPGSSVAI FGLGAVGLAAAEGARISGASRIIGVDLHSSRFDEAKKFGVTEFVNPNDHDKPVHEVIAEMTDGGVDRSVECTGSISAMISAFECVHDGWGVAVLVGVPSK DDSFKTNPMNFLSERTLKGTFFGNYKPRSDLPSVVEKYMNKELELEKFISHEVPFSEINKAFEYMLAKASLRCIIRMGA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Potri.007G108701 [exp]	0	1
AT2G38430			unknown protein		Potri.019G029800 [exp]	2.00	0.8117
AT5G56790			Protein kinase superfamily pro...		Potri.001G224800 [exp]	6.24	0.7862
AT5G27360		SFP2	Major facilitator superfamily ...		Potri.013G027800 [exp]	9.64	0.6537
AT1G80160		GLYI7	glyoxylase I 7, Lactoylglutath...		Potri.004G223300 [exp]	14.49	0.6538
					Potri.019G129600 [exp]	18.38	0.6621
AT1G56430		ATNAS4	ARABIDOPSIS THALIANA NICOTIANA...		Potri.010G143133 [exp]	20.78	0.7670
AT5G41761			unknown protein		Potri.014G095000 [exp]	24.61	0.7364
					Potri.008G176700 [exp]	25.49	0.6165
AT4G33790		G7, FAR3, CER4	FATTY ACID REDUCTASE 3, ECERIF...		Potri.009G145000 [exp]	25.90	0.7117
AT4G38220		AQI	aquaporin interactor, Peptidas...		Potri.004G208100 [exp]	28.19	0.6325

Compare expression of checked genes

Potri.007G108701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.